LOC117596848


Basic Information

Item Value
gene id LOC117596848
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7141099 ~ 7142302 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577839.1
GCACCGCCATGTTGAAGAGGGCTTTCAAGTTAAGCTAATTCTAGACTTAACCTGAATTTGTAGTGTTAGCTAAGATTGTGTACAAAAATGCTGTAACGCTGTGCATCATTTGCATggtcatggggtaacccggagcctatcccaggggactcggggcacaaggcagagACACGCTGGACGGGGTGGCAACACATCGCAGGCATAActgcgcacacactcacacacccattcactcactacagatttggaaatttggaaatgccgatcagcctacagtgcatgtctttggactgggggaggaaaccagagtacctggaggaaacccccaaagcacagggagaacatgcaaactccgtgcacacagggcggagatGGGTGTTGAACCTCCAACCCcggaggcaacagtgctaaccactaagccaccgtgctcCCCCTTGGGCATTTATTCCAAAAGGTACAAACAacttatgtgttttattttatagggAACTTCATGCAGGATGTGTTTCTGTTTCCGTTGAGAGGACATCAGTTGATTTTGATATGATTTTGTCACAGTTTTTAATAACTGGGTGTTCAGTGTTTACCATGAGTTTAGTAACCTCAATAAACCATATTTGGAACATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577839.1 True 628 lncRNA 0.46 2 7141099 7142302

Neighbor

gene id symbol gene type direction distance location
gstcd gstcd,LOC107095855,LOC106602269 coding downstream 21479 7017457 ~ 7119620 (-)
npnta npnt coding downstream 135065 6942697 ~ 7006034 (-)
aimp1a aimp1 coding downstream 296608 6824909 ~ 6844491 (-)
pkd2 pkd2,LOC107583176,LOC107684281,LOC107706826,LOC107675808 coding downstream 424836 6700324 ~ 6716263 (-)
LOC117596878 LOC108263069 coding downstream 481108 6643933 ~ 6659991 (-)
LOC113538928 LOC108261848,LOC108262968 coding upstream 176797 7319099 ~ 7325006 (-)
LOC113542008 LOC108261848,LOC108262968 coding upstream 183072 7325374 ~ 7338431 (-)
si:ch211-113e8.3 LOC108262753,LOC105903925 coding upstream 219613 7361915 ~ 7384163 (-)
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding upstream 487867 7630169 ~ 7646075 (-)
zgc:153642 NA coding upstream 560350 7702652 ~ 7715901 (-)
G42008 NA non-coding downstream 123694 7016765 ~ 7017405 (-)
G41944 NA non-coding downstream 128793 7012093 ~ 7012306 (-)
G41938 NA non-coding downstream 199641 6941240 ~ 6941458 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding downstream 343479 6794579 ~ 6797620 (-)
G41768 NA non-coding downstream 460826 6677130 ~ 6680273 (-)
G42173 NA non-coding upstream 171366 7313668 ~ 7315596 (-)
G42179 NA non-coding upstream 200165 7342467 ~ 7342681 (-)
G42315 NA non-coding upstream 294140 7436442 ~ 7438889 (-)
G42361 NA non-coding upstream 426069 7568371 ~ 7652220 (-)
G42391 NA non-coding upstream 529285 7671587 ~ 7672864 (-)
gab1 gab1 other downstream 1321586 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 1913132 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 2234860 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 2531649 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 4106546 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 19172 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 296602 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 992339 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 1327684 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 1328056 8470358 ~ 8470429 (-)

Expression


Co-expression Network