LOC117596850


Basic Information

Item Value
gene id LOC117596850
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7473370 ~ 7475040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577840.1
atatagagagacagaaagagagagagagactgcagtAGTTTCTGCTGCCAGATTAGCGTCTGACGTAGCATTATCACAGTGctgatatgagagagagagagagagagagagagagagagagagagagatggaaagagataGAGGTGAAGGCAGAAAGGAGGCTTTATGGCTGGAACACGACAGTCCTTTTACTGCCACGCagcgaaagaaagaaagaggagaggcGAAAGAGAACAGGCTTCACAGCGGGAGACTGCAGGATTGGAgtggagacacagagagagagagagagagagacagagagcaaaagagagagagagagagagagagagagcaagagagacagagagagaggggaagcaGATGAAAAAGCACTGaaagatgaaaaacaaaaagacaaagaaaataagACCAGCACTAGGAGGTTAGAAGGAAGGAGAGGGTTGTTGAAGAgcggaggaggagagaaagaaagggagggtgagagagcgagagaataGTAAAAGTAGACAAAGAGAAGAGTGTAAAAATCAAATGCACGAAGAGCGAGGAAGAGACTTCAaatggtgaacacacacacacagagCTCAACTAGGCGTCGAGATCCATCACCTGCCACCGTCGTCCTGTTTTTACAGTGAAACCGATCCTGACCGAATCACTACACGGTGATTCACATGCCATCTTTGGCTTGTAGGAAATAAGCGGCAGCATCGAGCGCGTGACACCGGTGTGATAATTACTTTCACGTCTTCTGCTTCTGAtcttcactacacacacctctcttCTCATTCATGAtagaaatgacacacacacagtttttcacAGCTATGTGCCACACGGGGACGGGAGAAGCAGCGCGCATGCCAGGAATTCCAGAGGCAGAAGCATCGTGACGGGAAGAACGGAGGCTCCGACTCCCACTTACTCGTGGAATGCAACTCTTTAACCTCTTAATCAGCATGGCAGCCTAGACATAGACGGAACAGCTTTCATTTGACTCCGGCAAAACACACACCGCGCTTTGCTCATCGTAGCGTGATACCTGAAAAACATTCCTCCTTTATAATCCAGACAGCGACACCTGTGTGAGGTTGTGTACAGGACTGTAAGAGGTGAAGGGAGGAAAATTAAGGCCAGGGCGCAGAGCGTCACACACAACCACTCGTGGTGCACACACAAAGGAAAAGCACACATCTGAGCTAAACACACATAAAGGCAGGTGAAAGGATGAGAAACCACAGGATAGAAATGCAACTCTATGCTCAGTGTACATCAGAAGGTTCCAACTCATAATACAGAAGCTGAGACGATTTTAGTACAGAGTTTAAGAATCAACAGTCAGTTATAGGCTACTTCCTGCCAAACCTGAAGAGGAATAAACAGTAGAAAATAGAAATGGCACAGCTCTGATGCACAGGATCGATAACGGGCCGatagtaccaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577840.1 True 1461 lncRNA 0.46 2 7473370 7475040

Neighbor

gene id symbol gene type direction distance location
LOC113543333 LOC108263754,LOC108444223,LOC103040975,LOC107674259,LOC107737089,LOC107559635,LOC107551115,LOC105903933 coding upstream 52441 7413508 ~ 7420929 (+)
LOC113543274 LOC108263610 coding upstream 65254 7396425 ~ 7408116 (+)
faah2a faah2a,LOC108263609,LOC108434801,LOC107737091,LOC107559634,LOC107551107,LOC107712025,LOC107674256 coding upstream 80123 7384072 ~ 7393247 (+)
LOC117596353 LOC108263508 coding upstream 114809 7356734 ~ 7358561 (+)
LOC113541239 NA coding upstream 116677 7354068 ~ 7356693 (+)
LOC113543305 LOC108262750 coding downstream 200196 7675236 ~ 7677859 (+)
htra3a LOC108263851 coding downstream 205729 7680769 ~ 7694527 (+)
LOC113543264 NA coding downstream 229409 7704449 ~ 7712546 (+)
LOC117596357 NA coding downstream 241000 7716040 ~ 7735909 (+)
gpr78a NA coding downstream 274596 7749636 ~ 7755159 (+)
G42208 NA non-coding upstream 51074 7422091 ~ 7422296 (+)
G42093 NA non-coding upstream 79586 7348159 ~ 7393784 (+)
G42098 LOC108262753 non-coding upstream 108439 7361200 ~ 7364931 (+)
G41951 NA non-coding upstream 456445 7016704 ~ 7016925 (+)
G41857 NA non-coding upstream 504531 6951392 ~ 6968839 (+)
G42295 NA non-coding downstream 165895 7640935 ~ 7644922 (+)
G42304 NA non-coding downstream 246609 7721649 ~ 7721851 (+)
G42307 NA non-coding downstream 258402 7733442 ~ 7733655 (+)
G42442 NA non-coding downstream 391635 7866675 ~ 7866918 (+)
G42447 NA non-coding downstream 434384 7909424 ~ 7909698 (+)
G42075 NA other upstream 252347 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1244685 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 2115510 5263582 ~ 5357860 (+)
G41047 NA other upstream 2131620 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 2701766 4664316 ~ 4771604 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 145505 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 174158 7649198 ~ 7671410 (+)
G42685 NA other downstream 990707 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 994584 8469624 ~ 8469881 (+)
sprn sprn other downstream 3077219 10552259 ~ 10558295 (+)

Expression


Co-expression Network