LOC117596855


Basic Information

Item Value
gene id LOC117596855
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3400795 ~ 3403106 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577844.1
aggtctGAGTGTTTGTGGTATGTGAAGGAGTGTCCGAAGCTATCTTTCATAGAGAAGGCAAAGACTGAACTGGCCCAGCTGAAGAAGACTGGATTTGGTCGCCCTCGACCAAGACATGGTCTGAAGCTTCTGCACTGGATTGCGGTTCATCTTAGCTTCCCCTGCGTCCATGGAACTCTAACCCCACAGACTCATCTGCCAATGCTGAATGGTTTCACAGAAACAAATGGCACAAGAGGAGAAAAAACTCACAGACCAACACAGACAAGAGACTCCCAGAAATGAACCAGAGGCCAGGGTGTGGTTCTCCACCAGGGACCTTAAGGAGAGACATGGCTGTAGAAAACTGACCCACAGATACATCAATGCCTTCAACATCATCCAACGCATCAGGTCTTCTTTACAAACTCCATCCACCAGAACCAACCACAACTGTCATGATTTGCAAATCCATGTGGCTCCCTTACAATTCACTCAAGCCAGTTTCCACTAGTGATTTTTATCCCATCAGCACTCACCGTTTTGAAGCGGACGAGGTGTTTCATGTGCATGATTCCCTGGCCGTAGTTCTGTGGCAGTAAACTGTCATCTTGTCCCTTTATCACAGCCACCAGGTCCCACAGGTTATGGCTCCCTCCTggaggctgaaaaaaaaactctcacaTCATCTTTTCCTAAAAACATCATGGGCTGAAAGTGTGCCTGTGTGGTTTTACTGACCGAGAAGCATTCAGAGAACCAGCGCAGTTTCTTTGTTCGCACATCACTGGAAAGTTTATCAAGTTCTTGCTTGATATCTCTGGACACTTTACCACAGAGGAGAGGGGGAGCGCCGGGAACCATCGCCCGATCTGTAATAAAACAGTAATGGCGGCTCACCTGTGTTTCCGATGATGTCATCCCAGCTGTGCTCAGTCAGGATGTTGATCAGCAGCGGGGCGATGAGAGGGGTCAGTGACCACAGGCGCACAGTCGAGTCCCTGGAGCAGGACGCCATGGTGAACGGGCGACTCGGATGGCACGTTAGACCTATGTACCGTAGACATCGGCTCCGTGGTCGTAGACGGTGTCCAGGCAGGTACCGTCCCTGGTGTCCCACACGCGGATGGTATAGTCCCAGCTGCCCGATGTGAGCAGGTACGGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577844.1 True 1146 lncRNA 0.51 4 3400795 3403106

Neighbor

gene id symbol gene type direction distance location
LOC113541773 NA coding upstream 24679 3373213 ~ 3376116 (+)
LOC117596854 NA coding upstream 41820 3356422 ~ 3358975 (+)
LOC113541782 NA coding upstream 47617 3350885 ~ 3353178 (+)
asb5b asb5,asb5b,LOC107752221,LOC107670925,LOC107737104,LOC107676689 coding upstream 75153 3307834 ~ 3325642 (+)
LOC113543098 tapbp coding upstream 94472 3296533 ~ 3306323 (+)
gpm6ab gpm6a,gpm6ab,LOC107670876,LOC107737106,LOC107752222,LOC107676686 coding downstream 31239 3434345 ~ 3503120 (+)
glra3 glra3,LOC106610166,LOC107670853,LOC106602381,LOC107752223,LOC106935306 coding downstream 169321 3572427 ~ 3641748 (+)
hpgd hpgd,LOC107752225,LOC107552502,LOC107737128,LOC107676678,LOC107558775 coding downstream 241372 3644478 ~ 3668492 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227 coding downstream 297473 3700579 ~ 3712836 (+)
hand2 hand2 coding downstream 399458 3802564 ~ 3805829 (+)
G38962 NA non-coding upstream 969708 2427812 ~ 2431087 (+)
G38948 NA non-coding upstream 974195 2411201 ~ 2426600 (+)
G38895 NA non-coding upstream 1088344 2311651 ~ 2312451 (+)
G38826 NA non-coding upstream 1235310 2165170 ~ 2165485 (+)
G38812 NA non-coding upstream 1274128 2123461 ~ 2126667 (+)
LOC117596918 NA non-coding downstream 111995 3515101 ~ 3525121 (+)
G40287 NA non-coding downstream 280237 3683343 ~ 3685205 (+)
G40374 NA non-coding downstream 461590 3864696 ~ 3865000 (+)
G40586 NA non-coding downstream 727009 4130115 ~ 4130322 (+)
G40590 NA non-coding downstream 824087 4227193 ~ 4227431 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 1309452 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 1403530 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 2176194 1194219 ~ 1224601 (+)
trmo trmo other upstream 2212201 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 2258861 1102778 ~ 1141934 (+)
LOC113545357 NA other downstream 428761 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 1261210 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 1860476 5263582 ~ 5357860 (+)
G41047 NA other downstream 1915428 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 2492325 5895431 ~ 6228685 (+)

Expression


Co-expression Network