LOC117596862


Basic Information

Item Value
gene id LOC117596862
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18087504 ~ 18091613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577851.1
ATAAACTGGGACTCTAAGTTATACCCTCATCTCAAACCAACACTGAGTACTCTGGAGAAAATGGCAGACACTGTAAGCCAGTGCTTCGCTTTGAAGAGACCATAGCAGGCCTGAACTATGGCGGGTTAATTTTCCATTCAACTATTGGACCTCATTGGAATAGGCATCAGATTCATGCCTTATATGATGTGAAGAAAGCCTTCAGTTTATATTGACATCCCAGAGAAAGACTTCATCTCACTGACAGTGCTGTGTACCGTCTTACCTCCCGACACTCCCACAGTCAACCATCCCACTATTCCTGGTTATACTGGGGAAGCTCTACAGACCACACACCGTAGCCACCGGCCAGCCGCCTTCAATGCTCACTCATCAGACTACAGGGAGCAGTTCAACACCATCATCCTATGATAGGCAAGGCCCTCTGTCCCCTCTGGTCATCACTGTCCCACCAGGCAATCCTTTCCTTCAACCTAAAGCTCCCTCACCTCCCATTTATTCATAGTCTCAATGCACAAAAATGGAATAGCCACCaaatggagaaataaaaaatgtttcttttcaaGAAGTCTAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577851.1 True 576 lncRNA 0.46 5 18087504 18091613

Neighbor

gene id symbol gene type direction distance location
ikzf1 ikzf1,LOC107721232,LOC107589539,LOC107708437,LOC107698154 coding downstream 6038 18063825 ~ 18081466 (-)
ttl ttl,LOC107678537,LOC107698152 coding downstream 32607 18047425 ~ 18054897 (-)
bag5 bag5,LOC107678581 coding downstream 76911 18001657 ~ 18010593 (-)
ckba ckb,kcrb,LOC107582489,LOC108263462,LOC108444021,LOC108263301,LOC107698148 coding downstream 116322 17965747 ~ 17971182 (-)
si:dkey-196h17.9 NA coding downstream 153586 17926887 ~ 17933918 (-)
vwc2 vwc2 coding upstream 16409 18108022 ~ 18122718 (-)
zgc:110045 zgc:110045,LOC108262845,LOC108444131,LOC107582498,LOC107708438,LOC107721227,LOC107678543 coding upstream 36736 18128349 ~ 18158184 (-)
vdac2 vdac2,LOC108444242,LOC107582506,LOC107747461,LOC107690181 coding upstream 609303 18700916 ~ 18711275 (-)
march8 march8,LOC107095557 coding upstream 625270 18716883 ~ 18786463 (-)
zfand4 zfand4 coding upstream 697088 18788701 ~ 18807597 (-)
G48419 NA non-coding downstream 2699 18083657 ~ 18084805 (-)
G48411 NA non-coding downstream 40618 18037687 ~ 18046886 (-)
G48368 NA non-coding downstream 99873 17987422 ~ 17987631 (-)
G48271 NA non-coding downstream 268900 17817285 ~ 17818604 (-)
LOC117596895 NA non-coding downstream 285618 17799740 ~ 17801886 (-)
G48476 NA non-coding upstream 75407 18167020 ~ 18173182 (-)
G48938 NA non-coding upstream 752140 18843753 ~ 18844635 (-)
G48940 NA non-coding upstream 761900 18853513 ~ 18853713 (-)
G48947 NA non-coding upstream 798950 18890563 ~ 18890812 (-)
G48954 NA non-coding upstream 836569 18928182 ~ 18929502 (-)
col13a1 col13a1 other downstream 426085 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 513082 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 611412 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 1104775 16979131 ~ 16982729 (-)
zdhhc16a LOC108263271,LOC108443446 other downstream 1631249 16444696 ~ 16456255 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other upstream 238755 18330368 ~ 18613521 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 1224874 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 1523104 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 1624987 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 2090440 20182053 ~ 20205593 (-)

Expression


Co-expression Network