LOC117596875


Basic Information

Item Value
gene id LOC117596875
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21525437 ~ 21526067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577869.1
ttcacacactcatgtatgtttttgggatgtgggagggAACCtcagaacccagaggaaacccacatggacatggggagaacatgcaaaactccatgCAGACAGTAACCTTAGCTCAGGTTCGATACAGGGGCCATGAAGCTGTGAGACGACAACGTTACCCATCATGCCACCTATTACTAAGttttcacGTCAGTGTTGTTAAAGTAAAGACTTCACACCTAAAGATAGCAGCTTTGAGGTTCAACTCACTCTTTGTCCTGCACCATGTTCCTATCCAGACGGGTGATGGGAGGATGTAGGTTTCCTGACACTTGACCATGTTGATCTCCATGTGAGTGAACACAAAGCACACAGCaggacagcagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577869.1 True 367 lncRNA 0.47 2 21525437 21526067

Neighbor

gene id symbol gene type direction distance location
prop1 LOC108263276 coding upstream 2902 21517786 ~ 21522535 (+)
socs5b LOC108263298,LOC108422458,LOC107727375 coding upstream 23938 21480699 ~ 21501499 (+)
six3a six3,LOC107733790,LOC107585256 coding upstream 341619 21180935 ~ 21183818 (+)
slc3a1 slc3a1,LOC107585281,LOC107579201 coding upstream 514847 21002369 ~ 21010590 (+)
trnae-cuc_10 NA coding upstream 519918 21005450 ~ 21005519 (+)
ttc7a ttc7a,LOC107586483,LOC107699274 coding downstream 5204 21531271 ~ 21560099 (+)
epcam NA coding downstream 80318 21606385 ~ 21609142 (+)
thada thada,LOC104958480 coding downstream 119669 21645736 ~ 21731864 (+)
LOC113542474 zfp36l2 coding downstream 207690 21733757 ~ 21736533 (+)
haao haao,LOC107727361,LOC107699283,LOC107586504,LOC107590002,LOC107707146 coding downstream 373489 21899556 ~ 21905109 (+)
G50528 NA non-coding upstream 7682 21516282 ~ 21517755 (+)
G50384 NA non-coding upstream 175404 21313204 ~ 21350033 (+)
G50311 NA non-coding upstream 311491 21210837 ~ 21213946 (+)
G50310 six2,six2a,LOC107666385,LOC107602488,LOC107602487 non-coding upstream 315322 21206394 ~ 21210115 (+)
G50297 NA non-coding upstream 326929 21198277 ~ 21198508 (+)
G50516 NA non-coding downstream 41348 21567415 ~ 21574053 (+)
G50772 NA non-coding downstream 342757 21868824 ~ 21869028 (+)
G50783 NA non-coding downstream 348746 21874813 ~ 21875015 (+)
LOC113545609 NA non-coding downstream 478651 22004718 ~ 22015489 (+)
G50880 eml4 non-coding downstream 509415 22035482 ~ 22041152 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 406473 21025733 ~ 21118964 (+)
G49862 NA other upstream 949958 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 1132836 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 2169339 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 2263349 19256064 ~ 19262088 (+)
wu:fj16a03 NA other downstream 494255 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 959243 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 1258261 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 1385077 22911144 ~ 22913552 (+)
G51562 NA other downstream 1928361 23454428 ~ 23455549 (+)

Expression


Co-expression Network