Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596876 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 31657051 ~ 31675951 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577870.1 | False | 560 | lncRNA | 0.48 | 5 | 31657051 | 31675951 |
| XR_004577871.1 | True | 633 | lncRNA | 0.49 | 5 | 31657051 | 31675951 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| slc30a10 | LOC108263333 | coding | downstream | 36720 | 31613602 ~ 31620331 (-) |
| LOC113541870 | LOC108263097 | coding | downstream | 132151 | 31519040 ~ 31524900 (-) |
| si:ch1073-126c3.2 | NA | coding | downstream | 631206 | 31022661 ~ 31025845 (-) |
| gfra1a | gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 | coding | downstream | 650589 | 30920905 ~ 31006462 (-) |
| trnag-gcc_2 | NA | coding | downstream | 901575 | 30755406 ~ 30755476 (-) |
| gphb5 | gphb5 | coding | upstream | 320558 | 31996509 ~ 32006650 (-) |
| esr2b | esr2 | coding | upstream | 455496 | 32131447 ~ 32188847 (-) |
| jag2a | LOC108263062 | coding | upstream | 515899 | 32191850 ~ 32230995 (-) |
| dcdc2b | dcdc2b | coding | upstream | 639507 | 32315458 ~ 32331216 (-) |
| iqcc | NA | coding | upstream | 655442 | 32331393 ~ 32336477 (-) |
| G56173 | NA | non-coding | downstream | 23725 | 31633095 ~ 31633326 (-) |
| G55992 | NA | non-coding | downstream | 333587 | 31323154 ~ 31323464 (-) |
| trnag-gcc_4 | NA | non-coding | downstream | 796545 | 30860436 ~ 30860506 (-) |
| trnag-gcc_3 | NA | non-coding | downstream | 805044 | 30851937 ~ 30852007 (-) |
| G55449 | NA | non-coding | downstream | 1033846 | 30619177 ~ 30623205 (-) |
| G56279 | NA | non-coding | upstream | 52822 | 31728773 ~ 31730112 (-) |
| G56271 | NA | non-coding | upstream | 141302 | 31817253 ~ 31827134 (-) |
| G56315 | NA | non-coding | upstream | 169086 | 31845037 ~ 31846195 (-) |
| G56305 | NA | non-coding | upstream | 183856 | 31859807 ~ 31933590 (-) |
| G56614 | NA | non-coding | upstream | 394812 | 32070763 ~ 32072498 (-) |
| G56150 | lclat1 | other | downstream | 56366 | 31563555 ~ 31600685 (-) |
| LOC113541990 | NA | other | downstream | 108418 | 31545901 ~ 31548633 (-) |
| rsrp1 | rsrp1 | other | downstream | 1312513 | 30340399 ~ 30344538 (-) |
| runx3 | runx3 | other | downstream | 1403595 | 30198325 ~ 30253456 (-) |
| khdrbs1a | khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 | other | downstream | 1495827 | 30152908 ~ 30161224 (-) |
| fndc5a | fndc5,LOC106918218,LOC106948404 | other | upstream | 2432 | 31678383 ~ 31830932 (-) |
| G56272 | NA | other | upstream | 151863 | 31827814 ~ 31829484 (-) |
| G56303 | NA | other | upstream | 161231 | 31837182 ~ 31838235 (-) |
| brf1a | brf1 | other | upstream | 563650 | 32239601 ~ 32289607 (-) |
| tmem39b | tmem39b,LOC107675583,LOC107705392 | other | upstream | 670804 | 32346755 ~ 32354500 (-) |
