LOC117596881


Basic Information

Item Value
gene id LOC117596881
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13889279 ~ 13889849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577873.1
cagctgtgtgtgctggtgctgcGGTGACGTCACAGCagagtaacagcacatccctcaGCATCACTGATGGAGCCCTCGCGTCCGGTGTACAGACTGTGTGAGATgaagctgaggaggaggaggagagacaatCCCAAACAGGAGGCTGAATATTTCACATCTGCTGCCAAAGACAAGGAGGGATttgatgtgaaatatataaattcatttatagGACGTGGAGTATTcagttgtgttcattttgataaGGGAGATTTTCTTTTTGAGTACAGAGGACAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577873.1 True 281 lncRNA 0.46 3 13889279 13889849

Neighbor

gene id symbol gene type direction distance location
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding upstream 255801 13588316 ~ 13633478 (+)
sec23ip sec23ip,LOC107655440 coding upstream 459019 13419948 ~ 13430260 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 484604 13385486 ~ 13404675 (+)
bag3 bag3 coding upstream 505936 13376724 ~ 13383343 (+)
pkd2l1 LOC108263119 coding upstream 523212 13359076 ~ 13366067 (+)
fancl fancl,LOC107585345 coding downstream 145789 14035638 ~ 14056463 (+)
soul2 NA coding downstream 303985 14193834 ~ 14197074 (+)
si:dkey-187a12.4 LOC108263835 coding downstream 399533 14289382 ~ 14292863 (+)
rin2 rin2,LOC105893488 coding downstream 406485 14296334 ~ 14328299 (+)
slc17a5 slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676 coding downstream 441643 14331492 ~ 14341288 (+)
LOC113545747 NA non-coding upstream 243941 13644120 ~ 13645338 (+)
G45712 NA non-coding upstream 290264 13521839 ~ 13599015 (+)
G45713 NA non-coding upstream 294454 13522906 ~ 13594825 (+)
G45640 NA non-coding upstream 513280 13375799 ~ 13375999 (+)
G45594 NA non-coding upstream 576058 13312994 ~ 13313221 (+)
G45875 NA non-coding downstream 4293 13894142 ~ 13896535 (+)
G46175 NA non-coding downstream 293142 14182991 ~ 14183193 (+)
G46176 NA non-coding downstream 293588 14183437 ~ 14183646 (+)
G46217 NA non-coding downstream 396801 14286650 ~ 14288287 (+)
G46337 NA non-coding downstream 498180 14388029 ~ 14388311 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 388229 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 854929 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 883956 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 951977 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 1245975 12639317 ~ 12643304 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 323520 14213369 ~ 14286542 (+)
cgas NA other downstream 471518 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1082719 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1903557 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 2180865 16070714 ~ 16075650 (+)

Expression


Co-expression Network