LOC117596893


Basic Information

Item Value
gene id LOC117596893
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4427999 ~ 4430867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577882.1
attaaaaaaaagcttgcttTAGACATTAACCTGCCAGTCGTTTTTGTTCCACACCTTGGTGATAATTTCCAGTAGCTATTGACGCTACTCTATAACAAAGGCAGAGAACTGAGCAACTGGCTTTCTTACAAAAATTTATGTTCTGTTATCTTATGCAagtattttagatttttagatttagtATTTCCTGTTAGTTTCAAGAATTAGTTTCAAGTCATATGTGTCcaattcttcttataccacttTTAGTTGTAATGATTATGTACTCCACCATATTACCCTAGCTTCACTAGTCACCAAAAATTGTTtggtataaaaataagaaataaaattggTGGAAAAGTTTAGCCTGTAGGTTTTGCATTACGTTGGTTAGTCTGTAAGTGGTCCACTTCTATTAAATACCAAACCAAATGTGAATATGCTCCTCTTTTTGAGCTAAAGACACCCAGCCATTCATTTCATATTGTATAGAAAGCAGTAAATAATTTAGAAGCCGAGGATTGTGAAAGCTGTGCAAAGACTCTTGATATTTAGGCTCCTGTAAAGCATCTAATATcttctaattattataattgtgTGTAATGGAGCACTATCATTTAATATATTCTTGGTTTAGCCCACATGAATAGGAGTATAATTACAATACATGATtaagtaaacaataaaactgaATGCACTTCctaacattattttttctatcatttgtatttcatatttttgtatgtgttttttctttctgttggtTCTTTTCTTTAGGCAGATTATAGAAAATTAGTTATATGTTAATGAGTTTTAACAGGTATTGCACGTATTAGTCCCAATTGCTGAATAAACTTGAGTATCCTATTCTGCTTGATTCTTGATTCTCCGATCATTTTGTTCCCCACTTTCAATTGATGATAAAGTTTTGTACACATGAGATACTCacttttgtctttgtttgtttcaaTATATAGCCTCCTTGCCACTGAGTAAAGGTTTGGGTTTTCGCATCTTGGTGGCAACATTGAAGATTTACAGTTTTGGAGAATAATGAGTGAAGAGAGGGCGATGACGCAGTGGAAACTGAAATATAATTCTGTTGTTTTCCTCTGTTGGTGACCACAGCATGTATCTTGTTAATTTGCTGGAAATGCACACAAGTTAAGAAAAATAATTCAACACGTACAGTAGATATCActgaaattcattcatcttggtGGTGATTATATGGCAAAACAATTTAACAACCAACCTTTCCTACTGCTAGATTTTTTAGCTTAATTATCCCTCAAAAAAGGAGGGATAATGGCCCTGACAAAACATATGTAAAGTGTGAGGTGTTCATCTCTTAGCCTTAACACCTGAAACACCCCCACTGcactctaaaaacaaaaacatctggAAAAGAAGTGGTTATGTGAAGGCGAACGATCCATCCAGTCTCAGGCAACTTTGCATATCTTTAAATGGCTAGCTGTGAATCTCCCACACCGCAGTCCCAGATAATGAGGAGCTGCTGACAGACCCTGATCTTTAACAGGACAGAAAACTGACCAGCTGGCATTCTAAGAGAGGATAAGCTTTTACTTGTAACTTATTTGTTCAATACTTAACAGTAATTGTGGCTCAAACAGTCAGTAACCACAATTATGTAATTTCTGGGGACAACAGGACATTCCTGTagagtatttattattttctatttgaaCACCTTTAAATTGTGGTCAAATTAAATGCATGCTTAGCCTCTGGGTGTTACAGCTGGTAGTTCTACTTTAATAAAGGttctaatgaaaaaaatatttgttataagaataagaaaattaCCAAAGTTTTGGCTTCGCATTCTAACTACACTAGGTTAATCTGTAAGAGCTTTGGTCCACTTCTATGAATACAGAAAGAATAGTGAAAGAGAATaatattccttacttaatatcatatattatttccagttttataTTCAAAGTTGGTGGTCTCCAATGTTTTTGGTATCAGGAAGAGGATGAAGATTACTTCAACACAGTTGGGGTTGCAATTTACAGTACATGTTAACACAGACATTTTCAAAACATGGAAATTCTCTGTTGTTTCTGTAGCCAAAAGAACTTACAGACTGATGGACTGAGTCTCCCTATATGCTTTAACTGATGAATCCATGACTTAGAATAGAGCCAAATCTGGCTCAtacttattcattttttgtaATTGCAATGGCAATTGTTGGCATTCTGAATTTTCactcaaaacattttttctaaATGTTATGATTTGGTCACAAATGTaatttgcctcacacctccagggttgggggttcgattcctgcctccgccctgcgTATGCAGAGTTTGCACGTTCTCCACGTGCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577882.1 True 2355 lncRNA 0.35 3 4427999 4430867

Neighbor

gene id symbol gene type direction distance location
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding upstream 587137 3838726 ~ 3840862 (+)
hand2 hand2 coding upstream 622170 3802564 ~ 3805829 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227 coding upstream 715163 3700579 ~ 3712836 (+)
hpgd hpgd,LOC107752225,LOC107552502,LOC107737128,LOC107676678,LOC107558775 coding upstream 759507 3644478 ~ 3668492 (+)
glra3 glra3,LOC106610166,LOC107670853,LOC106602381,LOC107752223,LOC106935306 coding upstream 786251 3572427 ~ 3641748 (+)
scpp1 LOC108262830 coding downstream 52681 4483548 ~ 4487275 (+)
tnip2 tnip2 coding downstream 64765 4495632 ~ 4500384 (+)
prmt9 prmt9 coding downstream 452129 4882996 ~ 4892379 (+)
si:dkey-27h10.2 NA coding downstream 1169018 5599885 ~ 5626477 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding downstream 1206000 5636867 ~ 5674128 (+)
G40665 NA non-coding upstream 13203 4414586 ~ 4414796 (+)
G40644 NA non-coding upstream 138570 4284700 ~ 4289429 (+)
G40592 NA non-coding upstream 198377 4229392 ~ 4229622 (+)
G40591 NA non-coding upstream 199451 4228182 ~ 4228548 (+)
G40590 NA non-coding upstream 200568 4227193 ~ 4227431 (+)
G40683 NA non-coding downstream 31603 4462470 ~ 4512698 (+)
G40704 NA non-coding downstream 111742 4542609 ~ 4545083 (+)
G40804 NA non-coding downstream 238887 4669754 ~ 4670544 (+)
G40805 NA non-coding downstream 240000 4670867 ~ 4671470 (+)
G40806 NA non-coding downstream 240761 4671628 ~ 4671901 (+)
LOC113545357 NA other upstream 593373 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 2336656 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 2430734 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 3203398 1194219 ~ 1224601 (+)
trmo trmo other upstream 3239405 1165845 ~ 1188594 (+)
nr3c2 nr3c2,LOC107598757 other downstream 233449 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 832715 5263582 ~ 5357860 (+)
G41047 NA other downstream 887667 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 1464564 5895431 ~ 6228685 (+)
G42075 NA other downstream 2773083 7203950 ~ 7221023 (+)

Expression


Co-expression Network