LOC117596906


Basic Information

Item Value
gene id LOC117596906
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 689114 ~ 689503 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577897.1
GTAAATGCACTTCTAAATAAATCTGGTGCAGATCCAGTTGAACCCACTACCTCCAACTTCACGAGTTCAAAGGATCAAGTTAATGGTTACATGGAATACAATTTACTAAACGTCATCAATCAGCCTGTCAATGACACATCTGCAAAGGTTAATCCAACTACGACTCGGTGCAGACTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577897.1 True 178 ncRNA 0.40 3 689114 689503

Neighbor

gene id symbol gene type direction distance location
LOC113525487 NA coding upstream 328 669887 ~ 688786 (+)
LOC113525482 NA coding upstream 56584 625093 ~ 632530 (+)
LOC113525486 NA coding upstream 225055 450594 ~ 464059 (+)
LOC117596915 NA coding upstream 262224 418514 ~ 426890 (+)
LOC113525489 NA coding upstream 318390 360956 ~ 370724 (+)
LOC113525488 NA coding downstream 8674 698177 ~ 702567 (+)
LOC117596917 NA coding downstream 296045 985548 ~ 988804 (+)
LOC113524625 LOC108263780 coding downstream 327891 1017394 ~ 1025345 (+)
arhgef38 arhgef38 coding downstream 349172 1038675 ~ 1061874 (+)
uso1 uso1 coding downstream 383234 1072737 ~ 1094921 (+)
LOC117596828 NA non-coding upstream 64716 623355 ~ 624398 (+)
G38324 NA non-coding upstream 349217 338816 ~ 339897 (+)
G38323 NA non-coding upstream 369094 319816 ~ 320020 (+)
G38322 NA non-coding upstream 373443 315329 ~ 315671 (+)
G38317 NA non-coding upstream 414065 269320 ~ 275049 (+)
LOC117596830 NA non-coding downstream 1382 690885 ~ 693150 (+)
G38481 NA non-coding downstream 20832 710335 ~ 710574 (+)
G38484 NA non-coding downstream 37135 726638 ~ 727365 (+)
G38489 NA non-coding downstream 51014 740517 ~ 741198 (+)
G38503 NA non-coding downstream 86533 776036 ~ 776249 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 475385 200601 ~ 213729 (+)
mtap mtap,LOC108263789 other downstream 32624 722127 ~ 744999 (+)
G38577 NA other downstream 374469 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 413275 1102778 ~ 1141934 (+)
trmo trmo other downstream 476342 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 504716 1194219 ~ 1224601 (+)

Expression


Co-expression Network