LOC113546173


Basic Information

Item Value
gene id LOC113546173
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2165623 ~ 2165784 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577910.1
atacttacctggcaggggcgataccatgatcaggaaggtggttcgcccaaggcgaggctcagccattgcactcgggctgtgctgacccttgcgaattccccaaatgtgggaatctcgGCTGCATAATTTCTAATAGTGGGGGACTGCGTTCACTCTCCCCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577910.1 True 162 ncRNA 0.56 1 2165623 2165784

Neighbor

gene id symbol gene type direction distance location
dctd dctd,cep44,LOC108263714,LOC107550883,LOC107671033,LOC100699771,LOC107684975,LOC102306286 coding upstream 1931 2151929 ~ 2163692 (+)
tmem134 tmem134,LOC107737124 coding upstream 46856 2109068 ~ 2118767 (+)
ing2 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107737097,LOC107684977 coding upstream 146663 2014948 ~ 2018960 (+)
si:dkey-117m1.4 si:dkey-117m1.4,LOC108263251,LOC108434122,LOC107559642,LOC107748830,LOC107671095 coding upstream 225697 1920162 ~ 1939926 (+)
cntf NA coding upstream 257971 1898791 ~ 1907652 (+)
LOC113544637 NA coding downstream 8803 2174587 ~ 2184648 (+)
LOC113541301 NA coding downstream 28165 2193949 ~ 2199535 (+)
vegfc vegfc coding downstream 1027517 3193301 ~ 3253363 (+)
LOC113543098 tapbp coding downstream 1130749 3296533 ~ 3306323 (+)
asb5b asb5,asb5b,LOC107752221,LOC107670925,LOC107737104,LOC107676689 coding downstream 1142050 3307834 ~ 3325642 (+)
G38826 NA non-coding upstream 138 2165170 ~ 2165485 (+)
G38812 NA non-coding upstream 38956 2123461 ~ 2126667 (+)
G38796 NA non-coding upstream 108798 2055651 ~ 2056825 (+)
G38761 NA non-coding upstream 199079 1941845 ~ 1966544 (+)
G38756 NA non-coding upstream 223873 1939980 ~ 1941750 (+)
G38895 NA non-coding downstream 145867 2311651 ~ 2312451 (+)
G38948 NA non-coding downstream 245417 2411201 ~ 2426600 (+)
G38962 NA non-coding downstream 262028 2427812 ~ 2431087 (+)
LOC117596855 NA non-coding downstream 1235011 3400795 ~ 3403106 (+)
LOC117596918 NA non-coding downstream 1349317 3515101 ~ 3525121 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 74280 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 168358 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 941022 1194219 ~ 1224601 (+)
trmo trmo other upstream 977029 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 1023689 1102778 ~ 1141934 (+)
LOC113545357 NA other downstream 1666083 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 2498532 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 3097798 5263582 ~ 5357860 (+)
G41047 NA other downstream 3152750 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 3729647 5895431 ~ 6228685 (+)

Expression


Co-expression Network