trnag-ccc


Basic Information

Item Value
gene id trnag-ccc
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11591335 ~ 11591405 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnag-ccc
GCACCGCTGGTGTAGTGGTATCATGCAAGATTCCCATTCTTGcgacccgggttcgattcctgggcGGTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnag-ccc True 71 tRNA 0.58 1 11591335 11591405

Neighbor

gene id symbol gene type direction distance location
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding upstream 296355 11254621 ~ 11294980 (+)
LOC113537959 znf518a coding upstream 538084 11044906 ~ 11053251 (+)
cpeb3 cpeb3 coding upstream 616662 10927320 ~ 10974673 (+)
ide ide,LOC107665588 coding upstream 697164 10866397 ~ 10894171 (+)
sfxn4 sfxn4 coding upstream 735198 10849735 ~ 10856137 (+)
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding downstream 221380 11812785 ~ 11815652 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding downstream 446096 12037501 ~ 12120513 (+)
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding downstream 542694 12134099 ~ 12143029 (+)
dmac2l atp5s coding downstream 738645 12330050 ~ 12340992 (+)
atl1 atl1,LOC107736665,LOC107705445,LOC107682422,LOC107602974,LOC107553217 coding downstream 812544 12403949 ~ 12418948 (+)
G44463 NA non-coding upstream 206171 11384792 ~ 11385164 (+)
LOC113545104 NA non-coding upstream 272460 11317785 ~ 11318875 (+)
G44398 NA non-coding upstream 293621 11297492 ~ 11297714 (+)
G44221 NA non-coding upstream 535481 11054078 ~ 11055854 (+)
G44222 NA non-coding upstream 537482 11053575 ~ 11053853 (+)
G44704 NA non-coding downstream 226323 11817728 ~ 11819947 (+)
G44777 NA non-coding downstream 363584 11954989 ~ 11995143 (+)
G44768 NA non-coding downstream 367135 11958540 ~ 11962186 (+)
G44843 NA non-coding downstream 435419 12026824 ~ 12027030 (+)
G44846 NA non-coding downstream 438229 12029634 ~ 12030106 (+)
dntt dntt other upstream 383473 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 982631 10594574 ~ 10608704 (+)
sprn sprn other upstream 1033040 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 3121454 8469624 ~ 8469881 (+)
G42685 NA other upstream 3125023 8465747 ~ 8466312 (+)
LOC113545306 cfap46 other downstream 91459 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 115530 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 154343 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 1044915 12636320 ~ 12636406 (+)
LOC117596823 NA other downstream 1047912 12639317 ~ 12643304 (+)

Expression


Co-expression Network