trnag-gcc


Basic Information

Item Value
gene id trnag-gcc
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11706935 ~ 11707005 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnag-gcc
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGgaggcccgggttcgattcccggccaatgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnag-gcc True 71 tRNA 0.62 1 11706935 11707005

Neighbor

gene id symbol gene type direction distance location
trnag-ccc NA coding upstream 115530 11591335 ~ 11591405 (+)
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding upstream 411955 11254621 ~ 11294980 (+)
LOC113537959 znf518a coding upstream 653684 11044906 ~ 11053251 (+)
cpeb3 cpeb3 coding upstream 732262 10927320 ~ 10974673 (+)
ide ide,LOC107665588 coding upstream 812764 10866397 ~ 10894171 (+)
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding downstream 105780 11812785 ~ 11815652 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding downstream 330496 12037501 ~ 12120513 (+)
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding downstream 427094 12134099 ~ 12143029 (+)
dmac2l atp5s coding downstream 623045 12330050 ~ 12340992 (+)
atl1 atl1,LOC107736665,LOC107705445,LOC107682422,LOC107602974,LOC107553217 coding downstream 696944 12403949 ~ 12418948 (+)
G44463 NA non-coding upstream 321771 11384792 ~ 11385164 (+)
LOC113545104 NA non-coding upstream 388060 11317785 ~ 11318875 (+)
G44398 NA non-coding upstream 409221 11297492 ~ 11297714 (+)
G44221 NA non-coding upstream 651081 11054078 ~ 11055854 (+)
G44222 NA non-coding upstream 653082 11053575 ~ 11053853 (+)
G44704 NA non-coding downstream 110723 11817728 ~ 11819947 (+)
G44777 NA non-coding downstream 247984 11954989 ~ 11995143 (+)
G44768 NA non-coding downstream 251535 11958540 ~ 11962186 (+)
G44843 NA non-coding downstream 319819 12026824 ~ 12027030 (+)
G44846 NA non-coding downstream 322629 12029634 ~ 12030106 (+)
dntt dntt other upstream 499073 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 1098231 10594574 ~ 10608704 (+)
sprn sprn other upstream 1148640 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 3237054 8469624 ~ 8469881 (+)
G42685 NA other upstream 3240623 8465747 ~ 8466312 (+)
LOC113544122 NA other downstream 38743 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 929315 12636320 ~ 12636406 (+)
LOC117596823 NA other downstream 932312 12639317 ~ 12643304 (+)
spef1 spef1 other downstream 1222554 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 1275401 12982406 ~ 13005323 (+)

Expression


Co-expression Network