trnag-gcc_3


Basic Information

Item Value
gene id trnag-gcc_3
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30851937 ~ 30852007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnag-gcc_3
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGgaggcccgggttcgattcccggccaatGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnag-gcc_3 True 71 tRNA 0.58 1 30851937 30852007

Neighbor

gene id symbol gene type direction distance location
trnag-gcc_2 NA coding downstream 96461 30755406 ~ 30755476 (-)
LOC113541964 NA coding downstream 98259 30746232 ~ 30753678 (-)
fam204a fam204a coding downstream 132237 30705014 ~ 30719700 (-)
LOC113542166 rab11fip2 coding downstream 209779 30623249 ~ 30642158 (-)
LOC113542134 LOC108263607 coding downstream 393817 30447258 ~ 30458120 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding upstream 68898 30920905 ~ 31006462 (-)
si:ch1073-126c3.2 NA coding upstream 170654 31022661 ~ 31025845 (-)
LOC113541870 LOC108263097 coding upstream 667033 31519040 ~ 31524900 (-)
slc30a10 LOC108263333 coding upstream 761595 31613602 ~ 31620331 (-)
gphb5 gphb5 coding upstream 1144502 31996509 ~ 32006650 (-)
G55449 NA non-coding downstream 228732 30619177 ~ 30623205 (-)
LOC113542125 NA non-coding downstream 233750 30504336 ~ 30618187 (-)
G55400 eif3a non-coding downstream 374327 30472604 ~ 30477610 (-)
G55351 NA non-coding downstream 437468 30355571 ~ 30414469 (-)
LOC113541972 NA non-coding downstream 450541 30397412 ~ 30401396 (-)
trnag-gcc_4 NA non-coding upstream 8429 30860436 ~ 30860506 (-)
G55992 NA non-coding upstream 471147 31323154 ~ 31323464 (-)
G56173 NA non-coding upstream 781088 31633095 ~ 31633326 (-)
LOC117596876 NA non-coding upstream 805044 31657051 ~ 31675951 (-)
G56279 NA non-coding upstream 876766 31728773 ~ 31730112 (-)
rsrp1 rsrp1 other downstream 507399 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 598481 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 690713 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 729115 30111831 ~ 30122822 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other downstream 740776 29879295 ~ 30111161 (-)
LOC113541990 NA other upstream 693894 31545901 ~ 31548633 (-)
G56150 lclat1 other upstream 711548 31563555 ~ 31600685 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 826376 31678383 ~ 31830932 (-)
G56272 NA other upstream 975807 31827814 ~ 31829484 (-)
G56303 NA other upstream 985175 31837182 ~ 31838235 (-)

Expression


Co-expression Network