trnal-cag


Basic Information

Item Value
gene id trnal-cag
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12734200 ~ 12734282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnal-cag
GTCAGGATGGCCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGgcgtgggttcgaatcccacttCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-cag True 83 tRNA 0.63 1 12734200 12734282

Neighbor

gene id symbol gene type direction distance location
rab4a rab4a,LOC107601855,LOC107666448,LOC106610715 coding downstream 1298 12724492 ~ 12732902 (-)
urb2 urb2,LOC107552917 coding downstream 38072 12686299 ~ 12696128 (-)
zgc:66472 LOC108263827 coding downstream 50451 12674753 ~ 12683749 (-)
trnae-cuc_9 NA coding downstream 65309 12668820 ~ 12668891 (-)
trnak-cuu_2 NA coding downstream 65635 12668493 ~ 12668565 (-)
rhoua rhou,LOC108263572,LOC107666438,LOC107601857,LOC108426825,LOC107725498,LOC107676561,LOC107743528 coding upstream 17058 12751340 ~ 12758155 (-)
tbp tbp,LOC107601858,LOC107666436,LOC107725488,LOC107676577 coding upstream 28279 12762561 ~ 12769000 (-)
cep68 cep68 coding upstream 49075 12783357 ~ 12790444 (-)
slc1a4 slc1a4,LOC107725464 coding upstream 57298 12791580 ~ 12810514 (-)
si:ch211-217g15.3 NA coding upstream 140932 12875214 ~ 12877240 (-)
G45323 NA non-coding downstream 10020 12721601 ~ 12724180 (-)
G45324 LOC108263641 non-coding downstream 12847 12719629 ~ 12721353 (-)
G45305 actc1,LOC105021204 non-coding downstream 16871 12714684 ~ 12717329 (-)
LOC117596890 NA non-coding downstream 104944 12628472 ~ 12629256 (-)
LOC117596888 NA non-coding downstream 105812 12627677 ~ 12628388 (-)
G45340 NA non-coding upstream 40163 12774445 ~ 12776116 (-)
G45391 NA non-coding upstream 74752 12809034 ~ 12809389 (-)
G45409 NA non-coding upstream 112225 12846507 ~ 12846713 (-)
G45415 NA non-coding upstream 124692 12858974 ~ 12862052 (-)
G45395 NA non-coding upstream 131826 12866108 ~ 12868456 (-)
trnak-cuu_1 NA other downstream 94598 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 94877 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 100782 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 199985 12524636 ~ 12534215 (-)
nin nin other downstream 269137 12435109 ~ 12465063 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 271204 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 695715 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 1447609 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 2045574 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2678631 15412913 ~ 15416483 (-)

Expression


Co-expression Network