trnav-cac


Basic Information

Item Value
gene id trnav-cac
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29105444 ~ 29105516 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnav-cac
gtttccgtagtgtagtggttatcacGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGgaaaca

Function

NR:

description
PREDICTED: interferon-induced protein 44-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnav-cac True 73 tRNA 0.56 1 29105444 29105516

Neighbor

gene id symbol gene type direction distance location
glo1 glo1,LOC103022823,LOC108426138,LOC107679178,LOC107667967,LOC107734292 coding upstream 12205 29084646 ~ 29093239 (+)
macrod2 macrod2 coding upstream 32484 28522346 ~ 29072960 (+)
mad2l1bp NA coding upstream 589433 28509055 ~ 28516011 (+)
LOC113542012 LOC108263175,LOC108263176 coding upstream 618060 28465659 ~ 28487384 (+)
psap psap coding upstream 640746 28453773 ~ 28464698 (+)
trnav-aac NA coding downstream 2326 29107842 ~ 29107914 (+)
zfand3 zfand3,LOC108426140,LOC107566515,LOC107679194,LOC107734288,LOC107676388,LOC107561772 coding downstream 3926 29109442 ~ 29135365 (+)
LOC113542066 mdga1,LOC107679144,LOC107676363,LOC107561756 coding downstream 57899 29163415 ~ 29361109 (+)
fam160b1 fam160b1,LOC107724610,LOC107568115 coding downstream 590761 29696277 ~ 29707979 (+)
smoc2 smoc2,LOC107724603,LOC107679127 coding downstream 686385 29791901 ~ 29829883 (+)
G53702 NA non-coding upstream 621546 28483699 ~ 28483898 (+)
G53699 NA non-coding upstream 637461 28467773 ~ 28467983 (+)
G53693 NA non-coding upstream 656580 28448331 ~ 28448864 (+)
G53629 NA non-coding upstream 667607 28436980 ~ 28437837 (+)
G53688 NA non-coding upstream 727181 28374776 ~ 28378263 (+)
G54724 NA non-coding downstream 12550 29118066 ~ 29143380 (+)
G54725 NA non-coding downstream 18977 29124493 ~ 29184455 (+)
LOC113542173 NA non-coding downstream 346380 29451896 ~ 29474301 (+)
G54958 NA non-coding downstream 575010 29680526 ~ 29684999 (+)
LOC113542139 NA non-coding downstream 760240 29865756 ~ 29870830 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other upstream 608838 28466088 ~ 28496606 (+)
G53692 NA other upstream 657133 28447377 ~ 28448311 (+)
pde10a pde10a other upstream 803621 28201035 ~ 28301823 (+)
znf451 znf451 other upstream 1898199 27197909 ~ 27207245 (+)
G53328 NA other upstream 2112733 26985978 ~ 26992711 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 606742 29712258 ~ 29748505 (+)
G55091 NA other downstream 832032 29937548 ~ 29941181 (+)
mgst3b LOC108263214,LOC103043280,LOC108426107,LOC106579764 other downstream 1248787 30354303 ~ 30358454 (+)
LOC113542119 NA other downstream 1374410 30479926 ~ 30486287 (+)
lbh lbh,LOC108263100 other downstream 2446499 31552015 ~ 31567173 (+)

Expression


Co-expression Network