trnay-gua


Basic Information

Item Value
gene id trnay-gua
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12636320 ~ 12636406 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnay-gua
CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGTCGCTGGTTCGAATCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnay-gua True 73 tRNA 0.55 2 12636320 12636406

Neighbor

gene id symbol gene type direction distance location
LOC117596891 NA coding upstream 21113 12613042 ~ 12615207 (+)
LOC113545096 NA coding upstream 26481 12607529 ~ 12609839 (+)
LOC113545271 NA coding upstream 32571 12601078 ~ 12603749 (+)
frmd6 frmd6 coding upstream 42176 12573987 ~ 12594144 (+)
tmx1 tmx1,txnd1,LOC105015420,LOC103371388 coding upstream 113574 12517553 ~ 12522746 (+)
trnat-ugu NA coding downstream 31408 12667814 ~ 12667886 (+)
abcb10 abcb10 coding downstream 66044 12702450 ~ 12712789 (+)
acta1b act2,actc1a,LOC105907633,LOC108430668,LOC107678759 coding downstream 78225 12714631 ~ 12717322 (+)
ccsapb LOC108263641 coding downstream 82499 12718905 ~ 12723241 (+)
pdcd2 pdcd2 coding downstream 123291 12759697 ~ 12762641 (+)
LOC113542444 NA non-coding upstream 137301 12489514 ~ 12499019 (+)
G45040 NA non-coding upstream 320450 12315533 ~ 12315870 (+)
G44972 NA non-coding upstream 478092 12156248 ~ 12158228 (+)
G44974 NA non-coding upstream 480198 12154384 ~ 12156122 (+)
G44970 NA non-coding upstream 491918 12144117 ~ 12144402 (+)
G45153 LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642 non-coding downstream 11489 12647895 ~ 12648406 (+)
G45170 NA non-coding downstream 38002 12674408 ~ 12674623 (+)
LOC117596851 NA non-coding downstream 97026 12733432 ~ 12739226 (+)
G45351 NA non-coding downstream 174513 12810919 ~ 12811250 (+)
G45360 NA non-coding downstream 184450 12820856 ~ 12821389 (+)
LOC113544122 NA other upstream 869906 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 891096 11682864 ~ 11745224 (+)
trnag-gcc NA other upstream 929315 11706935 ~ 11707005 (+)
dntt dntt other upstream 1428458 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 2027616 10594574 ~ 10608704 (+)
LOC117596823 NA other downstream 2911 12639317 ~ 12643304 (+)
spef1 spef1 other downstream 293153 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 346000 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 395644 13032050 ~ 13034350 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 861642 13498048 ~ 13501050 (+)

Expression


Co-expression Network