pgfb (pgf,LOC108435746)


Basic Information

Item Value
gene id pgfb
gene name pgf,LOC108435746
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15303235 ~ 15322051 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU196803
AACGCACAGGATGAGCAGCACACAGAAGCTTTAAAGCGCACACTGAAAAGCCACGCGCACTGACAGAAAGGCAACAAGTCCTCCTTAGCTTTGCATGCAATATCTCTGACATGTTTCCGTTTCGGAGCCATTCAAGGATCTGATACGGCTGTGCTGAGAAACGTCTGGAGTGTTTTGATATTTATCTAGTCAGTCAGGAAGGGACGGTCGCGCGCGCATCTTTTTTATTCGGCGAACACACTCAAGTcgttgcttcttcttcttcttcttcttcttgtcgtGGGATATATTTCTGACTTTTACGTAGCTGTTCCTGAGTGGATTTGTGTCACTGAAGTGAGTGGACTCAGGTCTTGGCACTGAAGTGTCCCAGCATGAGCGTGTTGGCGTCGCTGGTGCAGGTCATAGCGGCTGCGGTGCTGACGCTGCCCCTGGCTCAgTGTTCCCACTCAGGCTTTACCAACAGCACCTCTAAAGTAATCCTGTTTCAGGAGGTGTGGGGACGGAGCTTCTGCCGCACCATCGAGACACTGGTGGATGTAGTGCAGGAGTATCCTGGGGAGGTGGAGCACATGTACAGCCCGTCCTGCGTGCCATTGGTCCGTTGTGCTGGTTGCTGTGGAGATGAGAACCTTGAGTGCCACCCCACACTAACCTCTAACGTCACTATGCAATTATTAAAGCTGAAGCCAGCAGAGCAGAGACAGGAGTATGTAGAGATGACTTTTGTGGAGCATAAAAGCTGTGAATGTAGACTAAGAAAGCGTACACCAAAACATGACAGGTGGAAGCCAAGAGgacgggggaaaaaaagaaaggagaaacaGCGAGTGAAAGACTGTGATGGGTGCCAGCCTCCTCGAAGGTAAACGCAGTCTCTTCCTGCTCTCTGCCCATCCCATACTGCCTGCCCCTTCAGTGTACTGCCAGCCTCTTACAGCATCCTGCGTCACCTCAACCACCAGATCCAAGATGCACCATTGTCATGGTGATGGGGAGATCACCGGGGACATTTCATATAAAGGGAAGTGCCTTTTGTGAGGTGATACCCTCAGACGTGCATCTCACAAATCTCCTGAGGAGCATAACAGTGGTGGGCCAGACCTAGTGTCTGAGCTAGAACATGACCCC
>XM_026933789.2
AGTGCTGAGGGCCAATTAGTAGCCCAAGTGTGTGAGCATGCAGAGGAAACGCACAGGATGAGCAGCACACAGAAGCTTTAAAGCGCACACTGAAAAGCCACGCGCACTGACAGAAAGGCAACAAGTCCTCCTTAGCTTTGCATGCAATATCTCTGACATGTTTCCGTTTCGGAGCCATTCAAGGATCTGATACGGCTGTGCTGAGAAACGTCTGGAGTGTTTTGATATTTATCTAGTCAGTCAGGAAGGGACGGTCGCGCGCGCATCTTTTTTATTCGGCGAACACACTCAAGTcgttgcttcttcttcttcttcttcttcttgtcgtGGGATATATTTCTGACTTTTACGTAGCTGTTCCTGAGTGGATTTGTGTCACTGAAGTGAGTGGACTCAGGTCTTGGCACTGAAGTGTCCCAGCATGAGCGTGTTGGCGTCGCTGGTGCAGGTCATAGCGGCTGCGGTGCTGACGCTGCCCCTGGCTCAgTGTTCCCACTCAGGCTTTACCAACAGCACCTCTAAAGTAATCCTGTTTCAGGAGGTGTGGGGACGGAGCTTCTGCCGCACCATCGAGACACTGGTGGATGTAGTGCAGGAGTATCCTGGGGAGGTGGAGCACATGTACAGCCCGTCCTGCGTGCCATTGGTCCGTTGTGCTGGTTGCTGTGGAGATGAGAACCTTGAGTGCCACCCCACACTAACCTCTAACGTCACTATGCAATTATTAAAGCTGAAGCCAGCAGAGCAGAGACAGGAGTATGTAGAGATGACTTTTGTGGAGCATAAAAGCTGTGAATGTAGACTAAGAAAGCGTACACCAAAACATGACAGGTGGAAGCCAAGAGgacgggggaaaaaaagaaaggagaaacaGCGAGTGAAAGACTGTGATGGGTGCCAGCCTCCTCGAAGGTAAACGCAGTCTCTTCCTGCTCTCTGCCCATCCCATACTGCCTGCCCCTTCAGTGTACTGCCAGCCTCTTACAGCATCCTGCGTCACCTCAACCACCAGATCCAAGATGCACCATTGTCATGGTGATGGGGAGATCACCGGGGACATTTCATATAAAGGGAAGTGCCTTTTGTGAGGTGATACCCTCAGACGTGCATCTCACAAATCTCCTGAGGAGCATAACAGTGGTGGGCCAGACCTAGTGTCTGAGCTAGAACATGACCCCACAGGACACTGgctatataaagtaaaaaaaaaatatatatatatatatatataattgttaataatatattattattattattattattattattacgcaCACTATCTATGACATATcacatctttttatttattgcttgcAAACCAGAAGAGAGAGCATGTTTGGTTGTTTATGACTGAATACTCTGCTGAAGTTTGGCATGAGTACaaattgggatttttttttttttttttttagagataaAAATTTAATCACCAAAGACAGTTGGTTTTGCTAGAAAACTAACAGTAATCATTTCTGATGTTTCATTCACCGAGATAAGCAATGAGCTTCTTTAATCTTGTATTAATGAGTTCTCAGAGTAAATGTAATTACATATGCAATAACTGCAAGCTGATAGTTATGCAAGAATTGAAAGCTGGGACAAAGACCAAGAAACTCCTCCCTCCTTGCTTATATATTCCCTGTTCACACATACCAGTTCCTGTGAagacttttctctctctgtctcctccctGTCCCCCATGACCCCTCTACGCTTGTGTCGTTAGCAGATTGTCTGTTGGTTTGGCATTCTAGCTGTCAGAGCTCCAATCCAACTTCTCTGAGTTTGTATTTTCTTACAAGCATTCACTCCACAAACCAAATTCTTAAGCTTGAATAAGTCTACATGGAGAATGGTGCACATGGACTGCATTAGAGCTCTAAGTGACTTCTTATATGGTTCGTACATTGACGTAGTGACCTCTACTGGTATCAAGAAAGCAATtcaatatattatcattttccAAACATAAACAAACCTGCTGTACCGTACATATGATTTAAATAATGACAGTTCATGGAAGAGCCAGTGAATTTGATGAATTTGTGTATATGATTTTGCAATACGAGAGACGAGTGTAAATCAACATAAACTGAAGtttgaaataaaagtttattatttttgtctattaAAATGGTTCAAAAAAGGATGGGTTCAGGTCAGCAACATGATGAGACTcaaccaaaaaaatataaataataataataaattaaaaaacaacaacacctGCTGCTAATACTACTTGGCCTTAAAATACAAAAGTGACAATATCAGTTTAACAGTGACTAATAGTCTTTTATCAAATTAGTATTGTGtaaattctttcatttctcaGATTTTATTAGCACAGCACCAGATATAGGATTGTATTGGACTTAAACTGGCAGCATTTTTGTTGTGTTGCTGAGTGTGAACGTAAGagcaatttttttcatttttattaccaTCATGGGTCAAGagttttaaagttattttcagtttcatgtatattgtacatatttatatatgattttGATAATGTATTGCTATCGTGCCACTGCCAATAAAGAGATACATCATCTAA
>XM_026933790.2
AGTGCTGAGGGCCAATTAGTAGCCCAAGTGTGTGAGCATGCAGAGGAAACGCACAGGATGAGCAGCACACAGAAGCTTTAAAGCGCACACTGAAAAGCCACGCGCACTGACAGAAAGGCAACAAGTCCTCCTTAGCTTTGCATGCAATATCTCTGACATGTTTCCGTTTCGGAGCCATTCAAGGATCTGATACGGCTGTGCTGAGAAACGTCTGGAGTGTTTTGATATTTATCTAGTCAGTCAGGAAGGGACGGTCGCGCGCGCATCTTTTTTATTCGGCGAACACACTCAAGTcgttgcttcttcttcttcttcttcttcttgtcgtGGGATATATTTCTGACTTTTACGTAGCTGTTCCTGAGTGGATTTGTGTCACTGAAGTGAGTGGACTCAGGTCTTGGCACTGAAGTGTCCCAGCATGAGCGTGTTGGCGTCGCTGGTGCAGGTCATAGCGGCTGCGGTGCTGACGCTGCCCCTGGCTCAgTGTTCCCACTCAGGCTTTACCAACAGCACCTCTAAAGTAATCCTGTTTCAGGAGGTGTGGGGACGGAGCTTCTGCCGCACCATCGAGACACTGGTGGATGTAGTGCAGGAGTATCCTGGGGAGGTGGAGCACATGTACAGCCCGTCCTGCGTGCCATTGGTCCGTTGTGCTGGTTGCTGTGGAGATGAGAACCTTGAGTGCCACCCCACACTAACCTCTAACGTCACTATGCAATTATTAAAGCTGAAGCCAGCAGAGCAGAGACAGGAGTATGTAGAGATGACTTTTGTGGAGCATAAAAGCTGTGAATGTAGACTAAGAAAGCGTACACCAAAACATGACAGAGTTTATCATTTCTTAATTGTAGGTGGAAGCCAAGAGgacgggggaaaaaaagaaaggagaaacaGCGAGTGAAAGACTGTGATGGGTGCCAGCCTCCTCGAAGGTAAACGCAGTCTCTTCCTGCTCTCTGCCCATCCCATACTGCCTGCCCCTTCAGTGTACTGCCAGCCTCTTACAGCATCCTGCGTCACCTCAACCACCAGATCCAAGATGCACCATTGTCATGGTGATGGGGAGATCACCGGGGACATTTCATATAAAGGGAAGTGCCTTTTGTGAGGTGATACCCTCAGACGTGCATCTCACAAATCTCCTGAGGAGCATAACAGTGGTGGGCCAGACCTAGTGTCTGAGCTAGAACATGACCCCACAGGACACTGgctatataaagtaaaaaaaaaatatatatatatatatatataattgttaataatatattattattattattattattattattacgcaCACTATCTATGACATATcacatctttttatttattgcttgcAAACCAGAAGAGAGAGCATGTTTGGTTGTTTATGACTGAATACTCTGCTGAAGTTTGGCATGAGTACaaattgggatttttttttttttttttttagagataaAAATTTAATCACCAAAGACAGTTGGTTTTGCTAGAAAACTAACAGTAATCATTTCTGATGTTTCATTCACCGAGATAAGCAATGAGCTTCTTTAATCTTGTATTAATGAGTTCTCAGAGTAAATGTAATTACATATGCAATAACTGCAAGCTGATAGTTATGCAAGAATTGAAAGCTGGGACAAAGACCAAGAAACTCCTCCCTCCTTGCTTATATATTCCCTGTTCACACATACCAGTTCCTGTGAagacttttctctctctgtctcctccctGTCCCCCATGACCCCTCTACGCTTGTGTCGTTAGCAGATTGTCTGTTGGTTTGGCATTCTAGCTGTCAGAGCTCCAATCCAACTTCTCTGAGTTTGTATTTTCTTACAAGCATTCACTCCACAAACCAAATTCTTAAGCTTGAATAAGTCTACATGGAGAATGGTGCACATGGACTGCATTAGAGCTCTAAGTGACTTCTTATATGGTTCGTACATTGACGTAGTGACCTCTACTGGTATCAAGAAAGCAATtcaatatattatcattttccAAACATAAACAAACCTGCTGTACCGTACATATGATTTAAATAATGACAGTTCATGGAAGAGCCAGTGAATTTGATGAATTTGTGTATATGATTTTGCAATACGAGAGACGAGTGTAAATCAACATAAACTGAAGtttgaaataaaagtttattatttttgtctattaAAATGGTTCAAAAAAGGATGGGTTCAGGTCAGCAACATGATGAGACTcaaccaaaaaaatataaataataataataaattaaaaaacaacaacacctGCTGCTAATACTACTTGGCCTTAAAATACAAAAGTGACAATATCAGTTTAACAGTGACTAATAGTCTTTTATCAAATTAGTATTGTGtaaattctttcatttctcaGATTTTATTAGCACAGCACCAGATATAGGATTGTATTGGACTTAAACTGGCAGCATTTTTGTTGTGTTGCTGAGTGTGAACGTAAGagcaatttttttcatttttattaccaTCATGGGTCAAGagttttaaagttattttcagtttcatgtatattgtacatatttatatatgattttGATAATGTATTGCTATCGTGCCACTGCCAATAAAGAGATACATCATCTAA

Function

symbol description
pgf Enables growth factor activity. Involved in positive regulation of cell population proliferation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Implicated in several diseases, including brain ischemia; diabetic neuropathy; glioblastoma; myocardial infarction; and pancreatic endocrine carcinoma. Biomarker of several diseases, including artery disease (multiple); autoimmune disease of musculoskeletal system (multiple); epilepsy (multiple); limited scleroderma; and pancreatic endocrine carcinoma.

NR:

description
PREDICTED: placenta growth factor

GO: NA

KEGG:

id description
K16859 PGF; placenta growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
TU196803 False 1131 TUCP 0.51 7 15304623 15322004
XM_026933789.2 False 2566 mRNA 0.41 7 15303235 15322051
XM_026933790.2 True 2589 mRNA 0.41 7 15303235 15322051

Neighbor

gene id symbol gene type direction distance location
tmem63c tmem63c,LOC107732232 coding downstream 8567 15263327 ~ 15294668 (-)
coq6 coq6,LOC107739237,LOC107732250,LOC107586847 coding downstream 61308 15229914 ~ 15241927 (-)
si:ch211-163l21.10 bbof1 coding downstream 89037 15195828 ~ 15214198 (-)
gstz1 gstz1 coding downstream 118283 15177344 ~ 15184952 (-)
LOC113538889 LOC108269495 coding downstream 172534 15127843 ~ 15130701 (-)
naa30 naa30,LOC108270341,LOC108258186 coding upstream 76801 15398852 ~ 15404696 (-)
ap5m1 ap5m1 coding upstream 85289 15407340 ~ 15411753 (-)
tmem260 tmem260 coding upstream 191328 15513379 ~ 15542126 (-)
peli2 peli2,LOC108270353,LOC103028664,LOC108435764,LOC107586838,LOC107664501,LOC107668538,LOC107561697 coding upstream 286714 15608765 ~ 15625183 (-)
msh4 msh4 coding upstream 343429 15665480 ~ 15679210 (-)
G165951 NA non-coding downstream 57326 15245584 ~ 15245909 (-)
G165950 fam161b non-coding downstream 57772 15244866 ~ 15245463 (-)
G165949 fam161b non-coding downstream 58737 15244285 ~ 15244498 (-)
G165907 NA non-coding downstream 76509 15173237 ~ 15226726 (-)
G165882 LOC106571191,LOC101157503 non-coding downstream 196425 15100092 ~ 15106810 (-)
LOC113539013 NA non-coding upstream 159079 15481130 ~ 15491008 (-)
G166286 NA non-coding upstream 283852 15605903 ~ 15607522 (-)
G166289 NA non-coding upstream 342435 15664486 ~ 15846255 (-)
G166319 NA non-coding upstream 573616 15895667 ~ 15896570 (-)
G166380 NA non-coding upstream 611106 15933157 ~ 15933437 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 185871 15107120 ~ 15117364 (-)
nenf nenf other downstream 221030 15079696 ~ 15082205 (-)
nkx2.2a nkx2-2,nkx2.2a,LOC107558480,LOC107707659,LOC107737280,LOC108435751 other downstream 530354 14727133 ~ 14772881 (-)
exd2 exd2,LOC107558452 other downstream 1102438 14190691 ~ 14200797 (-)
G165451 LOC108269968 other downstream 1112750 14188238 ~ 14190485 (-)
ktn1 ktn1,LOC107668535 other upstream 310951 15633002 ~ 15663495 (-)
eml5 eml5,LOC108435760 other upstream 393509 15715560 ~ 15762718 (-)
mideasb elmsan1 other upstream 1551228 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 1844817 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 2293687 17615738 ~ 17624534 (-)

Expression


Co-expression Network