G166633


Basic Information

Item Value
gene id G166633
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16444841 ~ 16446005 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU197311
CCTTGAAAATGtagacattttattacatttgacaaATCTATCATAATTATAACATTCATTAGAAATTTTAACAAGAGCCCTTAAGTACTCTTTTCCATACATAGACATATACCTTAAACCACAAAACTATTAATAGAGAGACTAGAGAACAAACAGAGTGCATTCTCACTTTGGAGAACTGGAGTTGATTCAACTCAGAATCTTGAACAGTCATGCAAAACAATCAAATTTGTATCCCTAGTTtcctaaaacacaaaatattttgctCTGATCCTTaatttttaaagttaattttaTAACCTCATACTGGGaaaacattgttgttgttgttttttttttgtttgtttgtttttttttaagaggaaACTACAGGACAGATAAAGGAATATGGCTTGgcttttacaaaatatatacaccATGAAGACCATAAATATAATCtcgttgtgtgtgtttcttttttaatcaatcaTATAACACTACAACAACCCAATTTAATAAGTTAAGagaataatatttatatatccaGCCCAGCTAGATAACtacaattcatttttaatttttcattaatattacattatcaaatttatttttcaagtaaagagcttttgttttgttctgtgcaGGCGTGATCAAACCACTGGTGCTGCTCTGTGAGCACTGGCAGAACAGCTAGGACAAGAAGGTCCCCCTCAAGGGATGCTTTAGACTGAAATGTATGTAGATACTGCCCCTCGGTGGCAGTCTTTGATTGCACAATTGGCTGTTAAACAGCATCAGATAcctctgaattattttttttctttgcatccAAGACTCTATTGATTTTAATGTTACATCTGGTGTAGCGctgaaaaataaagtaaaaaaatatgtcTCATGGCTAAAGAACTGTCAATGAATTCATGTTAACAAATTAGATATGCTATTTGCAATTGACCAAGAATGCATGTAgtatagatactgtatatatgtaggTAGAATGTGAGGGTGTATGAAGTACCCCTTTGGTTTACAACCTGAACTGAGGTCACAGTGATCTGAACAGTATGAAAGTTTCATGCCAGTTATTCATTACTGATACGCTGAGCCATCATCGCAACTGCAACATGAGTCCATATAAAACAACAGCATGACCCAGCACTGAATGCTGGACATTTCCGCCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197311 True 1165 lncRNA 0.34 1 16444841 16446005

Neighbor

gene id symbol gene type direction distance location
cdan1 cdan1,LOC107582945 coding downstream 24056 16409811 ~ 16420785 (-)
stard9 stard9,LOC107662650,LOC107679770,LOC107724018,LOC107730214,LOC107572014,LOC108270056 coding downstream 36699 16379857 ~ 16408142 (-)
sptb sptb,LOC108270244,LOC108425666,LOC107662651,LOC107582900,LOC107602260 coding downstream 79581 16337712 ~ 16365260 (-)
LOC117598247 LOC108270244 coding downstream 85353 16358586 ~ 16359488 (-)
ccdc88c LOC108270124 coding downstream 107896 16282341 ~ 16336945 (-)
mbip mbip coding upstream 33174 16479179 ~ 16491045 (-)
nkx2.1 nkx2-1,nkx2.1,LOC107578306,LOC107582966,LOC107679765,LOC107666245 coding upstream 59888 16505893 ~ 16508515 (-)
nkx2.9 nkx2-8 coding upstream 67230 16513235 ~ 16515180 (-)
slc25a21 slc25a21,LOC107679800 coding upstream 94835 16540840 ~ 16620401 (-)
plekhh1 LOC108270359,LOC108425659,LOC107679799,LOC107752725,LOC107741858 coding upstream 180950 16626955 ~ 16657370 (-)
G166484 NA non-coding downstream 177326 16267229 ~ 16267515 (-)
G166390 NA non-coding downstream 444329 16000219 ~ 16000512 (-)
G166380 NA non-coding downstream 511404 15933157 ~ 15933437 (-)
G166319 NA non-coding downstream 548271 15895667 ~ 15896570 (-)
G166289 NA non-coding downstream 598586 15664486 ~ 15846255 (-)
G166865 NA non-coding upstream 298601 16744606 ~ 16744822 (-)
LOC113538645 NA non-coding upstream 393076 16839081 ~ 16865427 (-)
G166967 NA non-coding upstream 479271 16925276 ~ 16928196 (-)
G167011 NA non-coding upstream 521451 16967456 ~ 16969965 (-)
G167007 NA non-coding upstream 606479 17052484 ~ 17055548 (-)
eml5 eml5,LOC108435760 other downstream 682123 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 781346 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1122790 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 1327477 15107120 ~ 15117364 (-)
nenf nenf other downstream 1362636 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 427274 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 720863 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 1169733 17615738 ~ 17624534 (-)
G167566 apob other upstream 1859738 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1929398 18375403 ~ 18382455 (-)

Expression


Co-expression Network