LOC113538645


Basic Information

Item Value
gene id LOC113538645
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16839081 ~ 16865427 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU197613
CaatgtttaattacaaaaatgattttgtatAGTGCTTCAGAACTATCCCAAACATCATTCCATGGTTTTATGTATATCAAACTACATTACATTCTCCAAACTAAAACCTACTGGGCTTAATTTCTGACACTGCATTAAGGCTGGTTTTGAACTAAAATATAATGATGGAGATTAATCcgtgaaaaaacattttagccTAAATTCAGGCTTAATCTAGATCTCAGAAATCATCCCTCATTGCTCATAACAAAAAATAGTATGTCCATAGCCAGAGGGCCATGATTTGGTCACTTTCTTCTTTGGTTGAGCTATATATAGATAAAAAGGCTTGCAGCATGGTGTCCTAGTTTCCCCTGCTGGTTTGTAGAGGGAGGAaacctgtaaataaaaatgatagcCAGAATAAACACCACATTATCAATGGACATTGACAAGGTGTGCACTTAAAAGAGCAACTGATAAGAACTATATAAGACtataaaactgtttatttttattttctttatgtcTTAAACTACATAATTAAAAGGAATTCACTTCTAAAAATACTCAGCTAAAGCCCTCACCTGAGTCTGGATTTAATTGAATGTGTGGCTCTCGGTGCCTCCACGTCCAAaccctgagagagaaaaaacgagaaagacagaaggagagagacccATTAATGTATAGCATACTGGCAAATGGTTCAGCTTAGTGAGGAAACATTGACAGCTGAGTGAGGAAATACTGACAGCTGAGTGAGGAAATACTGACAGCTTGCCTATAGCAAGGTTTTTTCTAAGGTTTTTTTCAAGCTTATTTCTTCAAGTGGCGAATGATGTGAGATGGCACAAGATAACAGCTTGATAAGAGGCCTTGAAGGATTAGCTCTCTGAGCTCAATTAAATGCAGATAAAGATTTAGTGGGAGGACACCATATCTACTAAACAATTTTATTGCATATTCTTAGTTGATAATCAACCTCCTTTTTTTGGTAATGCAACAATGAATATTCACTCACCTTTGGGTCCGAAGAGTGCAGAGTAACATGGTTTGTTACAGTACGGCTTTCCCTCATCTCTGCATGGGAGCCTGCAGACAGGGTTTTATTGCATTTCTCACATTTCAGACAGGGTCTGTGCCAGTCCTTACCCAGAGATGACACTCTCTCGGCTGAAAAATAGAGACAAGCACTATTGTAATTCTAAGATATGGTTAACATTGTGAGTTTTTTTCATCCTGATACTATAAATAGATCTCTATTTGAATATTCCTCAGATCCTTGAGACTATTCTTCTAGAATGGTTGAAAGTCAAGTCTAATAAAATCAGCTCTGCtcaataatgtattttttcccctctcagtTGTCTCTAAGTTATGGTAAGGAAGATATTAGGTCAATATGTTTCTGCACAAAAGTATGATCTCTGGTGAATTCCCAACTCCTCCCTTGCAAAGGCCAATAAACTAGGCTTTATCTGTGGGGCAGTGCATAAAAGACATGAAAACAACTCCCATGATGATATCATAAAACAAGGCAAGGACAGAAAGGCACGCATCATGagatttattactattattgatGTCTGCACATGTTTTCGTGTTAAAGGATTTTTTCACGAAGGGTCTGCATTGCATAGAGGCCAAATGCTTGCAACACCGTGGAGATGTTCCcatgaaaaaagaagagaaaagctgTCAAAGGCTTTGTACATAAAGTGCAGCACACATAAAGCAACCTACAAAATGTAAcgaaaatgtaaaattaaagtgAAACATTACAAAAGTATTAATTGCTATTAGGCACATCATGCCTGGTTGAAGTGACCTGAAGGATAATATTTGCATAATAATAGATTGCATAGCTGTAGAGATTGCATATAGATTGCATAGCTGTAGAGgttatttcccaaaataaacCTGAGTTTAGGATAtcataaagtttaatatttgaaCAAACAATATGGCCTGTATAAAATGAAGGCTTGGCGTGGAAGGTGGTGTATTAAAGTCCTGAAAGGCTTGGTctggaaagttcagaaatgaaaaattctctaataaatagccaaaatagcaaattatacacatttaaataatatgcttaattattttttgtttataaaataaatctgtactgaggggttcctcttttttttttttttttttttttaacagttaactgtaaaacatttgaGAAACCCTGTTATAGACTATATATACAGTCCGTACCCTGAGAATTGATGGTCACTCCCTGATGTCCCTGATACTGTGTGCCAAGTTTATACAAAACTGAGTGTgggtgcgtatgtgtgtgtgccttgtATTTTTGCCATGATGTCCTCATCAGTTTACTGAGTGTGATGAACTTTGCAGATGATCTGTTCTGTATATCATAGTCCTGGTTACTCCCAGTGACGCACACCAAGGAGCAGGAGAGCTCATCCAAAGCGTGCGCATTCgtgcgcacacgcacacacacacacaaaaccacggAAAAATCCTTCTACTGAGAAAAAGTGACAGAGGATGACAGGAAGGGAAATGACAGCAGTGAATGGAAATTACTctagttgttgtttttcatcTGAACATTTCCTTTCCTAAAAACCCTGGTTTATAGCGTAAACATTGTTTTGTTAGGATCTCTGACTTGGTTTGCAATGAGTCTCActtcttttttcagtgttcagtgaaaACCCTTCAAAGGAAGTGCAAAAGCAGATAAACGTTTCAcactaaaaaaaacctgtatgCATTGAGATAACCGTTATTTAACCCTATTAGACTAAATATTGCTCTAACCTTctcctgtggtgtgtgtgtttttgtcacaAATCTATAATGAGAAATAGTGCATAAGCATAGAATTCCATGGTGATTACTGGTAAATCTCCAGACACTATGGGGATTGTTCTGCTTTCTCGTAAAGGACTCCTCCTACACTGCTGCTGTAGCTGAGGGAGGAAGGCAGAGGGCTTTTGAATTCCTCTAAGGgcggattttattatttttctctgtttctggATGATGATAAGATTAAGCCTCCATCAGCGAAGCAGCGACAGAGAGATTGTTTCCATCTGAACATTAGTGGTGTAAAGAATGAGAAGGTAAACAGATATTAACACACTGGATGTTACTTCATTTTACTGAATAAGGAGGATATAACTAGTCGAAAACACTTACACAGCTTAATAGAAATCACCAGAACAGCTGTAGCAGTATATACTATTGTAAACACAGCAGTCTTGCGATAGTGCACTTTGAATCTCATGCTTTGAAACCTACAAACAGTTTATTGCTGTTTTAGGGATTTCTTTAGAATCTTTCTGGCTTCAACCACCGACGAGTATTTAATCATATTATTGAATGTCTTCCCTACCAATTCATTCAAACCTACATAAATAATATGACCTATAAACTTTTGACAGACCACCAAGAAGACAGAAAAAGCTACTTTTgtttatagaaacaataaggaTTGATTGCAACCCTGACAAGGAAAGCAGTTAGTGAATGAACCAGGGTGTTTTCTTTGGCAGAAGGTGGGCAGTTCATCTATGgggaagggaaaagaaaaaaaaaagaatggaggATCAGTTCATCCTACTGTTGGCACAGTGCTGGAGTCCAGACATTACAAACAGAGAGATAGTGCTTTGTATTGTAGATTCAGTGAATTTACATGCCTCAGGCAGAACCCTCCTGACACCTGTCTAAGAAAAATGCTCCAGGGTGTAGTACATGAAACAGAGCACCTCACATCATATCTAATTCCCCTGTGATCCACTCAGGATCATCCTGCAGGCAGTTTCTAAACTTTTATCTTTCAGATTACTTTTAGGCAATAAATAAGGATTATGTCAGAGATTTTCAGCTTCttagaataaaacaaacaaagcttGTTAGGACTAGTATTGGGTAGTTTTGACTGAggtacttataataataataataataataataataataataataataataataataatgagtaatCTTCACTTTCTTCAATTTCCCTCGAACTCAACTGTAgcataaattcaaataaaaaggTAGCACTACCTAACAACATTATTCCGGATATATTGCTCACTACACAGGAAATGAGTTCAAATAGAGCACATGTGATATATTTGCGCGCTTCCTTGACGCGCCCTATTTGCGCAATGCACACGTTAAAGCTTGAACATTTTCGTTTAACGTATTCATTTTTGCGTTCTCCTTTCATAAAAACAAGTAGAAACATGGTTCCTTACCAAAGTACACTTCCTTGCTGCACTTGGGGCATTTAGGCATGTTGGCAGTTGCAGTATTGTTTCCTTGCTAGAATGAAATAGCTCCGGGCGGAAAGATTTGCGCAGCAGCAGCGGCGATTAACCCTCCACCTGCACTGACCTC
>TU197616
CaatgtttaattacaaaaatgattttgtatAGTGCTTCAGAACTATCCCAAACATCATTCCATGGTTTTATGTATATCAAACTACATTACATTCTCCAAACTAAAACCTACTGGGCTTAATTTCTGACACTGCATTAAGGCTGGTTTTGAACTAAAATATAATGATGGAGATTAATCcgtgaaaaaacattttagccTAAATTCAGGCTTAATCTAGATCTCAGAAATCATCCCTCATTGCTCATAACAAAAAATAGTATGTCCATAGCCAGAGGGCCATGATTTGGTCACTTTCTTCTTTGGTTGAGCTATATATAGATAAAAAGGCTTGCAGCATGGTGTCCTAGTTTCCCCTGCTGGTTTGTAGAGGGAGGAaaACCTGAGTCTGGATTTAATTGAATGTGTGGCTCTCGGTGCCTCCACGTCCAAaccctgagagagaaaaaacgagaaagacagaaggagagagacccATTAATGTATAGCATACTGGCAAATGGTTCAGCTTAGTGAGGAAACATTGACAGCTGAGTGAGGAAATACTGACAGCTGAGTGAGGAAATACTGACAGCTTGCCTATAGCAAGGTTTTTTCTAAGGTTTTTTTCAAGCTTATTTCTTCAAGTGGCGAATGATGTGAGATGGCACAAGATAACAGCTTGATAAGAGGCCTTGAAGGATTAGCTCTCTGAGCTCAATTAAATGCAGATAAAGATTTAGTGGGAGGACACCATATCTACTAAACAATTTTATTGCATATTCTTAGTTGATAATCAACCTCCTTTTTTTGGTAATGCAACAATGAATATTCACTCACCTTTGGGTCCGAAGAGTGCAGAGTAACATGGTTTGTTACAGTACGGCTTTCCCTCATGCTGAGAAGGAAAACATAATTCAATTTATAGCCTATAAATGGATATGGAGCAAAGCCCATTTGTGCACCCTTCCCCAAGACAAATGTGATGCTACTGTAGCTCCAGACATTGTTTTGACTGCAGTGTGATGCCAAAATCAACAGCCCGTAGAGTCAACAGCATCAAGTTACTTTTATGTAATGATTTGCTGGTGATGTGGTTCTTACCTCTGCATGGGAGCCTGCAGACAGGGTTTTATTGCATTTCTCACATTTCAGACAGGGTCTGTGCCAGTCCTTACCCAGAGATGACACTCTCTCGGCCAAAGTACACTTCCTTGCTGCACTTGGGGCATTTAGGCATGTTGGCAGTTGCAGTATTGTTTCCTTGCTAGAATGAAATAGCTCCGGGCGGAAAGATTTGCGCAGCAGCAGCGGCGATTAACCCTCCACCTGCACTGACCTC
>TU197619
TTCAATTTCCCTCGAACTCAACTGTAgcataaattcaaataaaaaggTAGCACTACCTAACAACATTATTCCGGATATATTGCTCACTACACAGGAAATGAGTTCAAATAGAGCACATGTGATATATTTGCGCGCTTCCTTGACGCGCCCTATTTGCGCAATGCACACGTTAAAGCTTGAACATTTTCGTTTAACGTATTCATTTTTGCGTTCTCCTTTCATAAAAACAAGTAGAAACATGGTTCCTTACCAAAGTACACTTCCTTGCTGCACTTGGGGCATTTAGGCATGTTGGCAGTTGCAGTATTGTTTCCTTGCTAGAATGAAATAGCTCCGGGCGGAAAGATTTGCGCAGCAGCAGCGGCGATTAACCCTCCACCTGCACTGACCTCGCCTTCAGCTGCAAGCGCGCTTTTATACTGCGTGAAGGGGAggctccagtgtgtgtgtgtgtgtttgagagagagagagagagagagaaacgGGTCGCAGTAGATCCAGACACTGTCCCGGAAACACTGGACATGAGAAGGGATACACCCTGGAAGAGAAGCCACTCCAGGGCACCatggacacactcacacacttatttatACCTGCTATAGCcaaatgtttttgggagttgggaggaaaccagagaacttggagcaaacccacatggacactgggagaacatgtgaaactccacagaTGGAGCTCAGGACCAAACTGGGGGACCTTGCagctatgaggcagcaacactacctacTGAGCCACCATGCCACTAAGAtgcaaaacaattaaaaacaatttatgatttatatCGCTGGATGAAACTTATGTTGAACTTAACACAATTCCTTTTGATCCACGAATCACGTATATCTTTCTTAAAACTGGCACTGCTGtaaattttactcattttatgaACTGTTCAAATTAAATAGACAATCAGAGCAAAGAAAGGTTGTATACAAATTTATTAAGAACACAAGCAGCAGGACATAAGTGGAAGCATTCGTCTCATTTTTACCAactaaaataaatcacacaatcAATAACAGTCTTTAAGTACTAAAGCACATTCCATAAGAATGCATTGTCATTAAAGTTTAACTTAAAGCTTCCTATCAGCTAATTCTGACTGGCAATGTGTTTTCATGCAAGTAATTCTTCAACATTCAGACCACATTAATGTAATACATTAAACAAATTATTGATACATTAATGGACATAAGCTAAAAATGGTCAGCTACTATAAGTACTAGTCTCAGCTACTTGATCATTAGGGAGCCATCACAAAGCCACACAACACCCTTCTACCGCACAACCACCTGGAGACAGGTTTGATTTCTCTCATAAAAATAAGATTTGACCCTTTATTTTACTGTCTGTAGATTTCGTACACATCTTTGTTGAGTTAGAAATGCTGTAGAGGCAGCCAAAGTGTAAATCTGGGTTGGTGAATATTTTGTAGATTTATAGTAGACTTATTTATTGCAGATATAAAGTACTGCAGCGCTGCACCTGGGCAAAGAAGTTCGAGAAGTGAGACCAATAATCTTGTCAGCAAGGTATTAAAAAATCCCAAATCCTTTACATATAAAACActttcagaacttttttttttacatttcattacattcagCTGGAAAACCACCACAGAGATATTATTCTACAGTGCTGTATGACTGACGTTATTGTAGCTAGCACCCTACTGTGGAAGAGCGTGGTAcaacataacaataataatgggTTGGATCACATACGTAAGATctatttataaaacttttaaatatattgcCATACTCCATAACAAATCATCAGAACAGGATGCTCAGACTGACAGCATCTATGTGTAACAAGGATGAAGCCATCAGACAACCATCAGTgaagggtcaaaggtcaggatGGGTTACGTTATGTGGCATCAGGTTTCCACAGATGTCCATGTTGGCAATGCTCTCAGTCGGTGTGGCTGGAGGCTGGGGAAtgtgttggtgtatgtgttggggaaggtgtgtgtgagcctGTATGAGGTACTGTAGTGGCTGTGTTTGTAGTGGTGATGTGTGACTGTAGTGCAGGGACGTTTTGAAGATGCATGCTCATGGCTGGGCCTCTGTGTTGACCTCCTTGTCATAAATGTAGCTGCCAACACCACCTGTGTTCAC
>XR_004578933.1
CGCTTTTATACTGCGTGAAGGGGAggctccagtgtgtgtgtgtgtgtttgagagagagagagagagagagaaacgGGTCGCAGTAGATCCAGACACTGTCCCGGAAACACTGGACATGAGAAGGGATACACCCTGGAAGAGAAGCCACTCCAGGGCACCatggacacactcacacacttatttatACCTGCTATAGCcaaatgtttttgggagttgggaggaaaccagagaacttggagcaaacccacatggacactgggagaacatgtgaaactccacagaTGGAGCTCAGGACCAAACTGGGGGACCTTGCagctatgaggcagcaacactacctacTGAGCCACCATGCCACTAAGAtgcaaaacaattaaaaacaatttatgattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197613 True 4383 lncRNA 0.37 2 16860838 16865427
TU197616 False 1318 lncRNA 0.41 3 16860838 16865427
TU197619 False 2153 lncRNA 0.41 2 16839081 16861229
XR_004578933.1 False 391 lncRNA 0.48 2 16840434 16860820

Neighbor

gene id symbol gene type direction distance location
mta1 mta1,LOC107679789,LOC107666257 coding downstream 27865 16776703 ~ 16811216 (-)
tmem229b tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331 coding downstream 63505 16761588 ~ 16775576 (-)
plekhh1 LOC108270359,LOC108425659,LOC107679799,LOC107752725,LOC107741858 coding downstream 181711 16626955 ~ 16657370 (-)
slc25a21 slc25a21,LOC107679800 coding downstream 218680 16540840 ~ 16620401 (-)
nkx2.9 nkx2-8 coding downstream 323901 16513235 ~ 16515180 (-)
tmem62 tmem62,LOC103132791 coding upstream 42295 16907722 ~ 16922047 (-)
hadhab hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738 coding upstream 63418 16928845 ~ 16937439 (-)
slc30a1b LOC108269644,LOC105895753 coding upstream 75200 16940627 ~ 16953297 (-)
impg1b LOC108270397 coding upstream 270051 17135478 ~ 17155642 (-)
iah1 iah1 coding upstream 829353 17694780 ~ 17699650 (-)
G166865 NA non-coding downstream 94259 16744606 ~ 16744822 (-)
G166633 NA non-coding downstream 393076 16444841 ~ 16446005 (-)
G166484 NA non-coding downstream 571566 16267229 ~ 16267515 (-)
G166390 NA non-coding downstream 838569 16000219 ~ 16000512 (-)
G166380 NA non-coding downstream 905644 15933157 ~ 15933437 (-)
G166967 NA non-coding upstream 59849 16925276 ~ 16928196 (-)
G167011 NA non-coding upstream 102029 16967456 ~ 16969965 (-)
G167007 NA non-coding upstream 187057 17052484 ~ 17055548 (-)
LOC117598293 NA non-coding upstream 211555 17076982 ~ 17088776 (-)
G167079 myo6b,LOC108269576,LOC107666253 non-coding upstream 259078 17124505 ~ 17125588 (-)
eml5 eml5,LOC108435760 other downstream 1076363 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 1175586 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1517030 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 1721717 15107120 ~ 15117364 (-)
nenf nenf other downstream 1756876 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 7852 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 301441 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 750311 17615738 ~ 17624534 (-)
G167566 apob other upstream 1440316 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1509976 18375403 ~ 18382455 (-)

Expression


Co-expression Network