G166967


Basic Information

Item Value
gene id G166967
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16925276 ~ 16928196 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU197674
ATTGCACTATGAAACTACCATCCAAAACCCATCACTccctttttattttaactatatTGAATTCTGTGAGCAGAAAATGTCATGCTATTAAGTCTTCTAGTTcaagaaacattttattcatcattctGGTTTTCTATTATTACAGAATTAGTTATTCAAATGTAAACCAAGGTCAGTTCTTAGCCTGATTAAAGGTGGACATTGGCCATCCTCAGTTTAGATCTTTAAAACACTACATTTAAGGAAACGTATGTACTTACTAGCCAGGTAGTAAAGTGTTCGATCCCGTGTTTGACTTTGAATTGCCAGTGTCCACCTTCACAACTAGTTTTCAAGTCATCTTGCCATGAACTAGTGTACTTAAAGtcatcagtaaaaaaaagtgctaaatgTATCAGTAAgaagttataataataaagctgtTATTTAGATTCAGAGAGAAAGCCAAGATATACCAGTCAACACTTACTGAATACTAGTAATGCCTGTTTAGGAGAATATTAAgaagaaatgtagaaaatgcACCCAAAAACTCAGTAAAGATGACAAAAATCACTAACAGCCAAAACATTTTACAGGTTGAAATACCTTTACGGTTAGTACATCATAAATCACTGCTTTGAAATTTGAGTGTATTCTGAACTTCCCCTCACCATCACCAAAAAGGTCCTCTGCACCCCCACAGCAATTGTCTAATGAAACTATAATTAAAGATTAATGCTGGAAAGGACAGGGAAGTGACACATGCTGAaaccaaggaaaaaaaataccaatGAGCAGCAATTTAACCAAACACGGTAATAGAAAGGCATAGATCAATTCATAAGCCTAAAATCTCACACATAGATCCAGAATAGACCTTTGCATTTGGGACTCATGTTCAGCATAGCCCCTAAAGTGCAGAATCTCAGACAGATAAAACATCAGTGGGACTGAGCAGCATTTGTTCATTAAACAAGTGCGTATAATTAGTTTTGACTTATCCTTAGAGAAAATAACTCAGTACTTAGAACCAAACAAGAAGGTCTGAAGTATTTCTCTTGAATGTGATACCTTACACTGACTCTTTAGGCCAACCGGCATGCAAGTTATTAATACAACAAAGACCATGACAATCAGGCCAGTCTGTGCCTTTACAGGCATTGTATGTGCACTGGGCGTATGAAAACGTGACAGcgtggaataacagagaacagTCTTTTGACTTCATTGCCGCAGGTCATAAGGCACAACCTTGAATGTTATAAGGGGAAGTGTCATATgaaacactcattcacagttCAGCAATTCAAACACTATCCATGAACTGTCTAATAAACTAAGCTCTCCTATTTCTAAATGGCATTAAGGCACAGAGTTCACAATAACATGAATGTTAAGTGTTATGTGTcccttttgtttttctcaatAAGTGTGTAATTATTTGATTGGTTTCCCTGTACACAGTGCTGTTGTCAGATCATCACTAAAGTAACAAAGGTCCTGTTTGATTGAATATTACTAACAGAAAATTGGGAAATTTATGTTTTGACACGGATACAATAGTTAAAGTACAGTGAGAGGTAAAGGTCTTGTCCAGCATAATGGGCATTTAGGTTAACATAGTTGTAAGAGATCAATCTTGTGCATTGTAAATGGTGTGAGGGTTTTTGGAAGCAAAGCAGTGAAACGCCTGTTCAACTGCAACACCTGATGCCTCCTGCAGAGCCACTTCTGTTGTTTATGTCGACATTTTCATTGGTCGGCTCCTTTCCAGGGGtctTTGCAAAATGTCTTCAGCAAGTGTGAGGAAAGCTTTTTCAATGTTGATGTTCGCTTTTGCACTCGTTTCAAAGAAGCGGATGTTGTGTTCTGAGGCAATCTGAAAACAAACGGGGATAATTACATGATTAAGCATGTCTGAACCGAAACCCTAAAACTTACCCTTTAAGCCTGCATTCTAGACACATCCCTCAGCTGTTCTAGGTGTACAGTCAACTCATGTAGGAAAATACTGTTACCCTGTCACAGGAATTTACCTGTTCTCCCTTTGCTTTAGATACCACGCGCATGTCCTCCATATCACACTTGTTACCAAGCAGCATTCTTTCCACATCCTCATTTGCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197674 True 2108 lncRNA 0.38 2 16925276 16928196

Neighbor

gene id symbol gene type direction distance location
tmem62 tmem62,LOC103132791 coding downstream 3229 16907722 ~ 16922047 (-)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 114060 16776703 ~ 16811216 (-)
tmem229b tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331 coding downstream 149700 16761588 ~ 16775576 (-)
plekhh1 LOC108270359,LOC108425659,LOC107679799,LOC107752725,LOC107741858 coding downstream 267906 16626955 ~ 16657370 (-)
slc25a21 slc25a21,LOC107679800 coding downstream 304875 16540840 ~ 16620401 (-)
hadhab hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738 coding upstream 649 16928845 ~ 16937439 (-)
slc30a1b LOC108269644,LOC105895753 coding upstream 12431 16940627 ~ 16953297 (-)
impg1b LOC108270397 coding upstream 207282 17135478 ~ 17155642 (-)
iah1 iah1 coding upstream 766584 17694780 ~ 17699650 (-)
asap2a asap2 coding upstream 780422 17708618 ~ 17781052 (-)
LOC113538645 NA non-coding downstream 59849 16839081 ~ 16865427 (-)
G166865 NA non-coding downstream 180454 16744606 ~ 16744822 (-)
G166633 NA non-coding downstream 479271 16444841 ~ 16446005 (-)
G166484 NA non-coding downstream 657761 16267229 ~ 16267515 (-)
G166390 NA non-coding downstream 924764 16000219 ~ 16000512 (-)
G167011 NA non-coding upstream 39260 16967456 ~ 16969965 (-)
G167007 NA non-coding upstream 124288 17052484 ~ 17055548 (-)
LOC117598293 NA non-coding upstream 148786 17076982 ~ 17088776 (-)
G167079 myo6b,LOC108269576,LOC107666253 non-coding upstream 196309 17124505 ~ 17125588 (-)
G167091 NA non-coding upstream 208940 17137136 ~ 17137467 (-)
mideasb elmsan1 other downstream 26546 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 1162558 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 1261781 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1603225 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 1807912 15107120 ~ 15117364 (-)
htr1b htr1e,LOC108269541 other upstream 238672 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 687542 17615738 ~ 17624534 (-)
G167566 apob other upstream 1377547 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1447207 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 1672099 18600295 ~ 18642889 (-)

Expression


Co-expression Network