G167011


Basic Information

Item Value
gene id G167011
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16967456 ~ 16969965 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU197740
aaaaaaaacaacaaaaaaaaaacacacattaaaaggAGGCACACTCCATTGGGTTTTGTGATTGCCACTATTATGAGAAAAGATTGCATTTGACGTCACAGATTGCGTGAAGAATATGTCCTTAACAAGAAGATGCTATTTTTTTATGTCTAATATGTCATTTTATGACCattattgacatttttaaagttgATGTACAGATGAAGAGGTGTGTCtaaaacagatacagagagatgttttgttttggcgaaagtaaatataataattttcattaGTACTGatccagaaaaaaagaaattcatattGTTCACTTACTGTATACCAAAGTATCACAATCTACCAATACAGGCATCTAAAATTTACCTTAGATAAAATCgtgttaaattaaaatcacCATTTCCCAACACCAAAAAAGATAAAGGAACAGAAGAAAATTAGCACAGTTATTTTATGTGTctctattttgtgtgtgtgtgtgtgtaaatacacacactgtatatcataCTGCATATATCAGTACAACCAGATCATGTACAATTACCAACTCGCACAACAACAACTATCAAAGTCACCTGAAAAAGACCTTCACACCCAAAGACACTCCATACAACTAGTTCTATGCATACACCACAAGCAAACACGACACAGTGGAGCTCAcacatatatgtaaatatagGAAGAATAAGAGAGGGAAACGCCCTCAGTAATGATTGTGACTTCTAAGGAAAATTGTAAAGATGCCAGCTAATGCCAcacaaagttatttttattcagagaAAAACTCGCTTGAGTAGTTCATAAATGTATTCCAGGTAAGACTAATCACATAAAATAGATTCATGGGAATTCTGGTACAAACAAAATTTATATAAAGTGTTATGTACACCCTGGATAGAGGCATTATAAAATGGGACAGCAAATATAAAGAAGACATAGTAAATAccctgtttgtttaaatgttatctAAAATTGATTGTAAATAgtctttttatattaaaatatattaattaaaatatattactttTCAAAACTACACAGACATTACAAACAAAATTTGCTTATTATCTGATTATCTCATTCCCACAATTTGACTTTGGTATAATCACCaacaaaaatcttttaaaaacgTCTGAAGTACGAggcagaaatttcacaaacATGACAACCAGGTGGATAACATGCACAACTTTATGTACATGTtcagtatattatatactacaaACCTATCAGAAGATACCTGTTTATCTGAATAGGGACAGTCCAGTattatacactgcaaaaaaatgaccactaaaaatattttgaatatagtcaaatttatctagtatttcttattataagcaATATAACTTGAAATAGACTTGCTGTATTGGCAgattattttgctcagtttaagcatttatttctagaaagaagcaaaattatctgccaatagaacaataAAATtcaaagcttgaaatgagtgaaaaaaaaaaggcttgaaataggtttaataatcttatattcagttcagtgtgatcttataataggaaatactagataattTTGACCATATTGAAATATTGTCACTTGGTAAGACATCATTTTTTGCTGTGTAGTGTGATTTGTATCATAGATAAAAGGTCATAAAAAGTGGAAACAATTccattatttacataataaacaCAATTCATTTCTCACACACTGGCGTATATTAATCAATattaagttttgttttgttttgttgttttttttaaaaaaaaacaaacaaaaaaaaaacagctgtgatTTCTTTTGAAAGTTTTAAAGAATATCTACAGTCTTGGAACTTCATTGTCAGTTCACACTCCTCACTGGTAAACAACATGTGAGTGTTTAGACAAATAGTGAAATGACAAAGACCTGGGTTTGCTCCTGAGAGGGAACATTACATTATTTCATTAAGAAGTGCTTTAGCTCCCATCATAATCAACTTACTCACAACATACTACACAGCGAGCAGTCTATTCAagttaccattttttttttatacaaaagtGCAACCCTAAAAAGAAGAAAGATATAAGGGATTTTGATTCTCTCTTAAATTTAGATGATTTAGAtgattcttttaataaatataacaaatgtacaaattattgCCACTTTCAGTTACCAAAATAATCCAGTCCTTATATTCCATGATATACCAAAAAGTGATTGAAGATTAGTGCTAGCCTGTGGTATTTAGTCCCTTCTGCTCCATAAATAACTTCGTGTTTATATCTACCACTGATGCTACTCACATCTAAGAGTACCACGTTTAGCCTAGACATAAGGCaagtcattaaaataatctttttttttttcacagtaattttcaaaagtaattggtaTTTTAGCTGTCTGGATCTTTGCTTGAGTTACTAAGGCTTAAACTATTCAACAAAAATTGCTTTGCTGAATAAgtacatattattattgttgttagtGATCCAACAAGCTgcacagtattaaaaaaataactgatttaaaaggaagcaagaaaaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197740 True 2510 lncRNA 0.30 1 16967456 16969965

Neighbor

gene id symbol gene type direction distance location
slc30a1b LOC108269644,LOC105895753 coding downstream 14159 16940627 ~ 16953297 (-)
hadhab hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738 coding downstream 30017 16928845 ~ 16937439 (-)
tmem62 tmem62,LOC103132791 coding downstream 45409 16907722 ~ 16922047 (-)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 156240 16776703 ~ 16811216 (-)
tmem229b tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331 coding downstream 191880 16761588 ~ 16775576 (-)
impg1b LOC108270397 coding upstream 165513 17135478 ~ 17155642 (-)
iah1 iah1 coding upstream 724815 17694780 ~ 17699650 (-)
asap2a asap2 coding upstream 738653 17708618 ~ 17781052 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding upstream 954756 17924721 ~ 17927050 (-)
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding upstream 1221994 18191959 ~ 18230475 (-)
G166967 NA non-coding downstream 39260 16925276 ~ 16928196 (-)
LOC113538645 NA non-coding downstream 102029 16839081 ~ 16865427 (-)
G166865 NA non-coding downstream 222634 16744606 ~ 16744822 (-)
G166633 NA non-coding downstream 521451 16444841 ~ 16446005 (-)
G166484 NA non-coding downstream 699941 16267229 ~ 16267515 (-)
G167007 NA non-coding upstream 82519 17052484 ~ 17055548 (-)
LOC117598293 NA non-coding upstream 107017 17076982 ~ 17088776 (-)
G167079 myo6b,LOC108269576,LOC107666253 non-coding upstream 154540 17124505 ~ 17125588 (-)
G167091 NA non-coding upstream 167171 17137136 ~ 17137467 (-)
G167124 NA non-coding upstream 391988 17361953 ~ 17362156 (-)
mideasb elmsan1 other downstream 68726 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 1204738 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 1303961 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1645405 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 1850092 15107120 ~ 15117364 (-)
htr1b htr1e,LOC108269541 other upstream 196903 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 645773 17615738 ~ 17624534 (-)
G167566 apob other upstream 1335778 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1405438 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 1630330 18600295 ~ 18642889 (-)

Expression


Co-expression Network