LOC117598293


Basic Information

Item Value
gene id LOC117598293
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 17076982 ~ 17088776 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU197772
CTTCAATCTAATTTCGTTGGATAATTTTATGGTTCCCCTGCTGTGCCACTTAAATGTATTACGCTTATCTTAATAGATAGTTCCTTATAATGCATTGAGTGTTTATtggccattttgtttgtttggtgcTGTTCGCTACTCACTCCTACCAAGAAGGTTTATGTCTGACAGCTtgacataaattaaaaataattcagagcATTTTACTTCCAATCAGATATTTAGGTCATTTGTTTAATATAGTTGAATTATACAAGCATTGTTCAGCACACTATTTAGCACTCTAATATCAGGTAGTTTGCTTGTCGTTAGTTTGTAGCAATCACATTTCCTCAGTCTGTGtgtgtgtgtgttactacaGTAATATTACATACTGTAATAATGCATCCCTGTGTAGGTTCATCCTGCTTTAATGCTGTGATTCAGTCTTACGATCAAAAGTACCGTACAAGGTTGGACAGGGTTTATTTGAACTTTTGAGAGGAACATAACACATACACTTCTAGTGCatacatacatttaatatatggtatatattaaaaaaagatggtCGAGAAACATCAAGAGAAATGTtccaaaaggaaacaaaaacatccacacACATGAATATTCAGCACCAATAGAGAAATCCTAGTGTATCTGTTGGACTGTTTCACTATGACATCTTTACTGTGGTTTCTCTGTTACAGATGTGTTCTACAGTGGGGTCTCCCAACACGGCCGAACTACTGACGGGAGTAGTAACAGAACCAGTAAAAGACACGCTAGAAATAAATCTCCTTTTACTCTAGCACTTCAGTATGTTTGTGAGCTATCTGGCCATTTTCAGGGGTTATTCATTCACTGACTGGGGTTTAAGTGTTTGAGTTTCGAAACATTTACAGATGTTAcaggtgttattttttttatattgggCAACACACAATACCAAATCATAATAAACTGACTTGTTAagaagtagtttttttttgtgatcgTTAAAAGCCTACATCCATTCTCCAACATTTAACCAAGTCtcaaaagaattaaaaatatgttaagtTTAACACAATTTGAAAACGcatagatatattttttttagtattactGGTGTTATGTGACTGTGAACTCAAAAAGGCAATTCCAGGCAATTACATAAACATGACACGGTCAGATTTAACTGAGAAAATCAATCCTGATATGTGACACTGTAAACATGGCATTCATATTGGTTCACATTTATGGGAGGTACATTACTATGTTACTTGACCATAAACACTCTCGGCAAATCTAAGAATGAATAGCTACTGATAACACtcagcaacacaacacaagTCTACCGCACAGGGACACACCACTGTTGCCACTCACCAAGTCATGTGGGGAAAACAAATGCTGAAACAATAGaataataaaccaataaacCAATATGAACATACACAGTCTCTGGCTAAATCATAGCTGTGGCATTAACTAGATTTGATTTTAACTTGCTTTTGAATCATCCACAAGTCAACAggcatgtgaaagaaaaaaataattaaatatacacactgaaaataCAAAAGCGATACTGAGGCTGCAATATagaagcatctttttttttaatgtgttatttgaTTACCACAACAGATGTACAGTTTAACAAATGGAGAGGCAGGGTAGTACTGTACATAAGTGCAATTCCAAAGATAAAACACTGAGGTAAACACATAGTCATGTGcccaaataatttaaaaatgtggcaaaatatataataatacattgtcCCACATCCATTAGCTGCAGTACTGTAACGTTTGTTCAAATTGTCTGCCAAATTTATACAtcttttaaaggaatattcGAGCATTTTTACAACCTAATCAATCATCAATACATGAACAGAGTATGTGCGGCTGATGATAGATTCAACGTTTCCCTGTATCGAGGAAACAACAGAAAAACTGTTTTCACGAAACCGAGTTAAAATCAgcgtctaagggcagttgttggagCATCAGTAAAGGtttatgcaaaacatttttttgctctttttctcagtacagggaaatgaGAGTACTCACAACATTCTTGTCCATGGGAATATCATAACAGCAAACTGGTGTGGTGGATAGAGATCAGGTTGAAAAAAACTCTTAAGTATTCCTTTAACTGTTGCATATCACAGTGCGCTGTTCTGACTATAGTGATATAAAGTGAAGTAGAGAGGATCAGAGGAGAACTTGCTTGCACCTTTACCAAATGAACTATATGACACCAAGACCAGATTAATCAATGCTAGTGTAATTCATCAATACCAACATCTCTCACACAGGATCTAAAAACCACACAGATACCTTGTTTTCCGTTTTTTCCTTCAAAATAACccctttttttcctgaaatcaTTAACATGGACATTTAATTATGCTAATAGCAAAGTGACAAGGGTTAAATAAATTTTGGTCAATGTGAAATCATCAGATAATATTAGGTGTTTAGTTTGCGGTTTAGTTATTCAGTGGCTCCAAAAATAGCAGCAGCTGATGTTACCATATGCCACTGGATCTACCACCAGGAGGAGCCAGAATCCTTTGGGAAGATCTCTTTGGAAGGTCGTCATCAATCTGGAC
>XR_004578973.1
CAAAAACATAACCCGGCCTTTGcccgactttttttttttttttcaccagcagAGAAAAGCTGGAGAAGAAATTTGTAACCTCAAATTTTAAAGTCACACTGTGGGTGGATGTGTTCTACAGTGGGGTCTCCCAACACGGCCGAACTACTGACGGGAGTAGTAACAGAACCAGTAAAAGACACGCTAGAAATAAATCTCCTTTTACTCTA

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU197772 True 2593 lncRNA 0.35 2 17076982 17079705
XR_004578973.1 False 209 lncRNA 0.42 2 17078785 17088776

Neighbor

gene id symbol gene type direction distance location
slc30a1b LOC108269644,LOC105895753 coding downstream 123685 16940627 ~ 16953297 (-)
hadhab hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738 coding downstream 139543 16928845 ~ 16937439 (-)
tmem62 tmem62,LOC103132791 coding downstream 154935 16907722 ~ 16922047 (-)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 265766 16776703 ~ 16811216 (-)
tmem229b tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331 coding downstream 301406 16761588 ~ 16775576 (-)
impg1b LOC108270397 coding upstream 46702 17135478 ~ 17155642 (-)
iah1 iah1 coding upstream 606004 17694780 ~ 17699650 (-)
asap2a asap2 coding upstream 619842 17708618 ~ 17781052 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding upstream 835945 17924721 ~ 17927050 (-)
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding upstream 1103183 18191959 ~ 18230475 (-)
G167007 NA non-coding downstream 21434 17052484 ~ 17055548 (-)
G167011 NA non-coding downstream 107017 16967456 ~ 16969965 (-)
G166967 NA non-coding downstream 148786 16925276 ~ 16928196 (-)
LOC113538645 NA non-coding downstream 211555 16839081 ~ 16865427 (-)
G166865 NA non-coding downstream 332160 16744606 ~ 16744822 (-)
G167079 myo6b,LOC108269576,LOC107666253 non-coding upstream 35729 17124505 ~ 17125588 (-)
G167091 NA non-coding upstream 48360 17137136 ~ 17137467 (-)
G167124 NA non-coding upstream 273177 17361953 ~ 17362156 (-)
LOC117598352 NA non-coding upstream 363590 17452366 ~ 17466774 (-)
G167152 NA non-coding upstream 447643 17536419 ~ 17536775 (-)
mideasb elmsan1 other downstream 178252 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 1314264 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 1413487 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1754931 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 1959618 15107120 ~ 15117364 (-)
htr1b htr1e,LOC108269541 other upstream 78092 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 526962 17615738 ~ 17624534 (-)
G167566 apob other upstream 1216967 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1286627 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 1511519 18600295 ~ 18642889 (-)

Expression


Co-expression Network