G167079 (myo6b,LOC108269576,LOC107666253)


Basic Information

Item Value
gene id G167079
gene name myo6b,LOC108269576,LOC107666253
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 17124505 ~ 17125588 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU197811
CTGTAGGATTCGCTCATCCTCTTCCcgcttcttcctctcctcctcttcctgcttCCTCTTCTGCTCCATCTCTGCTTTCATGCGACGGTCATCTTCCTCCTGTTTGCGTAACTGTGCCTCTTCTTCgcgtctctttctctccctctccatttCCTCCTGGATGTGTTTCAACCgctccatctcctcctcttcctgcttcttcttctgcaTGGAGGAAAGCAGCTGCTCTGAGCGCTTCACCAGGTCCTCGTATTCCTGTTCAATCTCTGTGCGACTCATCACTGTAGTC

Function

symbol description
myo6b Predicted to enable actin filament binding activity and microfilament motor activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception; glial cell development; and sensory organ development. Predicted to be located in several cellular components, including clathrin-coated pit; filopodium; and ruffle membrane. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including endocytic vesicle; microvillus; and ruffle. Is expressed in anterior macula. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 22; autosomal recessive nonsyndromic deafness 37; ovarian cancer; and sensorineural hearing loss. Orthologous to human MYO6 (myosin VI).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197811 True 289 lncRNA 0.52 2 17124505 17125588

Neighbor

gene id symbol gene type direction distance location
slc30a1b LOC108269644,LOC105895753 coding downstream 171208 16940627 ~ 16953297 (-)
hadhab hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738 coding downstream 187066 16928845 ~ 16937439 (-)
tmem62 tmem62,LOC103132791 coding downstream 202458 16907722 ~ 16922047 (-)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 313289 16776703 ~ 16811216 (-)
tmem229b tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331 coding downstream 348929 16761588 ~ 16775576 (-)
impg1b LOC108270397 coding upstream 9890 17135478 ~ 17155642 (-)
iah1 iah1 coding upstream 569192 17694780 ~ 17699650 (-)
asap2a asap2 coding upstream 583030 17708618 ~ 17781052 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding upstream 799133 17924721 ~ 17927050 (-)
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding upstream 1066371 18191959 ~ 18230475 (-)
LOC117598293 NA non-coding downstream 35729 17076982 ~ 17088776 (-)
G167007 NA non-coding downstream 68957 17052484 ~ 17055548 (-)
G167011 NA non-coding downstream 154540 16967456 ~ 16969965 (-)
G166967 NA non-coding downstream 196309 16925276 ~ 16928196 (-)
LOC113538645 NA non-coding downstream 259078 16839081 ~ 16865427 (-)
G167091 NA non-coding upstream 11548 17137136 ~ 17137467 (-)
G167124 NA non-coding upstream 236365 17361953 ~ 17362156 (-)
LOC117598352 NA non-coding upstream 326778 17452366 ~ 17466774 (-)
G167152 NA non-coding upstream 410831 17536419 ~ 17536775 (-)
G167250 NA non-coding upstream 544062 17669650 ~ 17672773 (-)
mideasb elmsan1 other downstream 225775 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 1361787 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 1461010 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1802454 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 2007141 15107120 ~ 15117364 (-)
htr1b htr1e,LOC108269541 other upstream 41280 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 490150 17615738 ~ 17624534 (-)
G167566 apob other upstream 1180155 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1249815 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 1474707 18600295 ~ 18642889 (-)

Expression


Co-expression Network