sox11a (sox11b,LOC108269454)


Basic Information

Item Value
gene id sox11a
gene name sox11b,LOC108269454
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 17385507 ~ 17430751 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU197864
aaagacagacagaaagagagagagagagagagagagagaaagggaagaaagcgtaaatgaaaacagacttttttctGGCAGCATGACAGGgttttaaggatttttttctgtaggtCTACAAATATATCGATCGACTACAGTTGGGccgcagtggggaaaaaaatctgagaacTTCTATGCATCTTTAACCCTCTTTATAACTGCAGGGAGATGAACTCATTAAGACTGTGGACTGACTCGAAGCGAATCTGTGAACTTTTTTTCACCGTTCATTCAGGACGCCAACttcaaaaaaaccaacaaaaaacaaacaaaaacacacggTCGTTTCTGTTCTTTTGAAAGGTCTTCTTTTTCCGTTTTTCTACCCGATTCTCGTTTACTTACCGGTGTGAACCTTAAAGCAGCCTATTTTCATCCTCTGCGGAGTCGCAGGTGGCGGAGGACCCGTTTTGATACATAAACAGACCtcatgtttttaaaagaaagcaaACTATTTTCAGGCGTATTTTtgtacagtgcaaaaaaaaaaaaagggaatgttCTTTACCGCGCGCTCAGTGAGTTTCAGGCACTTCTTTAACACATCAGTTTGTCTGAGCATGCAAAAGCGAGTCCCAGATCAACTCCGACTCGACTCAGCAATGCCTTGTGatttgaagcttttttttttgtacagttgTAGATCAGATTCGTCCAGTATTTGTAGAACATAatggcatttgtgtgtgtgagggagccagagagggagagagagagagaaagagagagagaagtaccTCCATGCTGGTACTAGTTTCCAGATTGTATATGTACTGTAAAATAGTAAAAGTTAGGAGTTTATGTATATCATACTCGTGATATGTGGATGGGTCCCAAATCGCAGGTGtgaaactggattttttttattattattattatttcttacgGCACATACTGtttccccttcattttttttttttttttttgtttgtgcaaTATATTTACTTGTAAATGCAGACCATCTACATTTTTATTGTAGCAAAGGGTGGCCAGGCAGACATGTGGGCTATGAACAATATGATCTGTCACCATGCTGAAGTCTGTCTTTACAGTGATAAGGAAAGTAATCAGCTGGAACTGATGGAAAAGAAATTGAAAATGATGCATGCATGATATGATGCATtactgtggagaaaaaaaaataaaatcagtatcCCGctaaaaaacatttgatttacTACAAGAAATCTATAGAATATGACcctgtttaaaaaagaataaaatttgGCAGGTATTGATTGTAGGTGAGCTGGCTGAAAAAATGTCaagtaagcaaaaaaaaaagtacattccATGTCCTTGTTTCATATGATGGAACGTTTTATGTTCATCGTAAGACTGCCTTCTTTTTTAACGCAACCATAGACCTGTATTTTTTGGTTTCTTGCACTTAAgcagattttgtttatttgatgtgGGTCttacatgaagtctgttttgaaTATGTGTTCGGGAATGTGAAAACCAAGAGAAGTGGTGACACATTGAGCAGCAGTTGCCTCACATTCCAAGTGTGAATCTCTTTGActcatgttttaataaataaatatct
>TU197866
aaagacagacagaaagagagagagagagagagagagagagaaagggaagaaagcgtaaatgaaaacagacttttttctGGCAGCATGACAGGgttttaaggatttttttctgtaggtCTACAAATATATCGATCGACTACAGTTGGGccgcagtggggaaaaaaatctgagaacTTCTATGCATCTTTAACCCTCTTTATAACTGCAGGGAGATGAACTCATTAAGACTGTGGACTGACTCGAAGCGAATCTGTGAACTTTTTTTCACCGTTCATTCAGGACGCCAACttcaaaaaaaccaacaaaaaacaaacaaaaacacacggTCGTTTCTGTTCTTTTGAAAGGTCTTCTTTTTCCGTTTTTCTACCCGATTCTCGTTTACTTACCGGTGTGAACCTTAAAGCAGCCTATTTTCATCCTCTGCGGAGTCGCAGGTGGCGGAGGACCCGTTTTGATACATAAACAGACCtcatgtttttaaaagaaagcaaACTATTTTCAGGCGTATTTTtgtacagtgcaaaaaaaaaaaaagggaatgttCTTTACCGCGCGCTCAGTGAGTTTCAGGCACTTCTTTAACACATCAGTTTGTCTGAGCATGCAAAAGCGAGTCCCAGATCAACTCCGACTCGACTCAGCAATGCCTTGTGatttgaagcttttttttttgtacagttgTAGATCAGATTCGTCCAGTATTTGTAGAACATAatggcatttgtgtgtgtgagggagccagagagggagagagagagagaaagagagagagaagtaccTCCATGCTGGTACTAGTTTCCAGATTGTATATGTACTGTAAAATAGTAAAAGTTAGGAGTTTATGTATATCATACTCGTGATATGTGGATGGGTCCCAAATCGCAGGTGtgaaactggattttttttattattattattatttcttacgGCACATACTGtttccccttcattttttttttttttttttgtttgtgcaaTATATTTACTTGTAAATGCAGACCATCTACATTTTTATTGTAGCAAAGGGTGGCCAGGCAGACATGTGGGCTATGAACAATATGATCTGTCACCATGCTGAAGTCTGTCTTTACAGTGATAAGGAAAGTAATCAGCTGGAACTGATGGAAAAGAAATTGAAAATGATGCATGCATGATATGATGCATtactgtggagaaaaaaaaataaaatcagtatcCCGctaaaaaacatttgatttacTACAAGAAATCTATAGAATATGACcctgtttaaaaaagaataaaatttgGCAGGTATTGATTGTAGGTGAGCTGGCTGAAAAAATGTCaagtaagcaaaaaaaaaagtacattccATGTCCTTGTTTCATATGATGGAACGTTTTATGTTCATCGTAAGACTGCCTTCTTTTTTAACGCAACCATAGACCTGTATTTTTTGGTTTCTTGCACTTAAgcagattttgtttatttgatgtgGGTCttacatgaagtctgttttgaaTATGTGTTCGGGAATGTGAAAACCAAGAGAAGTGGTGACACATTGAGCAGCAGTTGCCTCACATTCCAAGTGTGAATCTCTTTGActcatgttttaataaataaatatct
>XM_026933757.2
aGTTAAGAAGGAGGTTTGTAACTCTGGGAAGAGTGGATGAGCGTGCGTTAAGGCAGCGAGCAGACGCGCACAGGTGAAATATACAGCACAGAGACTCTGTCAGTGGGAGAGACGAGGTGCTGCGAGGGGAAAAACAGAAGCATGGTACAGCAGACAGAGAACTGCGAGACGGAGAGTTTGTCCAGAGAGGCGACCGACTCCGACGAGAGCGAGTTTATGGCGTGCAGCCCGGTGCCCGGCTCTGAGATGAACCCGGACTGGTGCCGGACAGCCACCGGCCACATCAAGCGGCCCATGAACGCCTTTATGGTATGGTCCAAAATCGAGCGGCGAAAGATCATGGAGCAGTCGCCGGACATGCACAACGCTGAGATCTCCAAGCGCCTGGGCAAACGCTGGAAAATGCTGAAGGACAGCGAGAAGATCCCGTTCATCCGCGAAGCCGAGCGGTTGCGCTTGAAGCACATGGCAGACTACCCTGACTACAAGTACCGTCCGAAGAAAAAACCAAAGCTGGACAATAACTCGTCCAAATCGGCGCTGTCTCCTGAGAAGTGTGCAAAGATGCCGAAAAGCGGCGGTGCCTCCAACAAGAAGTGTCCCAAACTGAAAACGAGTAAGTCTGGAAGCAAGTACGCGGATGACTACGCGTACAAGAGTGCCAAAGTGGCGAAAATCGTGAAGAGTGACTTCACGGATGATGACGACGACGACGACTACGAGTACGAGGAGGAGAGGACGCGGGCGCGCTTGAACGACCTGGACGATGAGGAGCAGACTCGCGCGTACGGCGCGGCTAAAGTCCCCGCCAGTCCCACGCTGAGCGCCGGCGCAGACCCGGAGACCGCCAGCATGTACGAGGACGCGACGCGGAGCTCAGCGCCACACGGCGCGCGCCTCTACTACAACTTCAAGAACATCACCAAGCAGAGCGCGCCGtgcgcctcctcctcctcttcctcctcctcatcctcctcctcatcctcatccccAGCCTCGGCGCGCTCCGTGTCCACATCGTCCAGCTCGAGCGAGGACTCGGATGACCTGCTGTTCGATTTTAGCCTCAATTTAGCGGCGGCGTCGCAGGGCTCCGAGTCGGGCGGCCTCGCTTcaaatctctccctctccctagTGGATAAGGACTTGGACTCGTTCAGTGAAGGCAGCCTCGGCTCGCACTTTGAGTTCCCTGACTACTGCACACCCGAGCTGAGCGAAATGATCGCCGGCGACTGGCTCGAGAAAAACTTTTCCGATCTGGTGTTTACGTACTAAATCAGTAATAACGGCTGAAGGattgaaaaaaatgatgaatttcaCGTGTCATGTACACGCTTGTTTGTTGTGATCCTCCATCACCTTGTGGTGTTTGCCTGCTTAGCAGTTTGggggagaagagagaaaggTTGGAGGAGTAGATGCGTATGAAGAATGGTACTgtagcaaagagagagagagagagagagagagagagagagaagggaagaaagcgtaaatgaaaacagacttttttctGGCAGCATGACAGGgttttaaggatttttttctgtaggtCTACAAATATATCGATCGACTACAGTTGGGccgcagtggggaaaaaaatctgagaacTTCTATGCATCTTTAACCCTCTTTATAACTGCAGGGAGATGAACTCATTAAGACTGTGGACTGACTCGAAGCGAATCTGTGAACTTTTTTTCACCGTTCATTCAGGACGCCAACttcaaaaaaaccaacaaaaaacaaacaaaaacacacggTCGTTTCTGTTCTTTTGAAAGGTCTTCTTTTTCCGTTTTTCTACCCGATTCTCGTTTACTTACCGGTGTGAACCTTAAAGCAGCCTATTTTCATCCTCTGCGGAGTCGCAGGTGGCGGAGGACCCGTTTTGATACATAAACAGACCtcatgtttttaaaagaaagcaaACTATTTTCAGGCGTATTTTtgtacagtgcaaaaaaaaaaaaagggaatgttCTTTACCGCGCGCTCAGTGAGTTTCAGGCACTTCTTTAACACATCAGTTTGTCTGAGCATGCAAAAGCGAGTCCCAGATCAACTCCGACTCGACTCAGCAATGCCTTGTGatttgaagcttttttttttgtacagttgTAGATCAGATTCGTCCAGTATTTGTAGAACATAatggcatttgtgtgtgtgagggagccagagagggagagagagagagaaagagagagagaagtaccTCCATGCTGGTACTAGTTTCCAGATTGTATATGTACTGTAAAATAGTAAAAGTTAGGAGTTTATGTATATCATACTCGTGATATGTGGATGGGTCCCAAATCGCAGGTGtgaaactggattttttttattattattattatttcttacgGCACATACTGtttccccttcattttttttttttttttttgtttgtgcaaTATATTTACTTGTAAATGCAGACCATCTACATTTTTATTGTAGCAAAGGGTGGCCAGGCAGACATGTGGGCTATGAACAATATGATCTGTCACCATGCTGAAGTCTGTCTTTACAGTGATAAGGAAAGTAATCAGCTGGAACTGATGGAAAAGAAATTGAAAATGATGCATGCATGATATGATGCATtactgtggagaaaaaaaaataaaatcagtatcCCGctaaaaaacatttgatttacTACAAGAAATCTATAGAATATGACcctgtttaaaaaagaataaaatttgGCAGGTATTGATTGTAGGTGAGCTGGCTGAAAAAATGTCaagtaagcaaaaaaaaaagtacattccATGTCCTTGTTTCATATGATGGAACGTTTTATGTTCATCGTAAGACTGCCTTCTTTTTTAACGCAACCATAGACCTGTATTTTTTGGTTTCTTGCACTTAAgcagattttgtttatttgatgtgGGTCttacatgaagtctgttttgaaTATGTGTTCGGGAATGTGAAAACCAAGAGAAGTGGTGACACATTGAGCAGCAGTTGCCTCACATTCCAAGTGTGAATCTCTTTGActcatgttttaataaataaatatctacacCATAAA

Function

symbol description
sox11b Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including camera-type eye development; negative regulation of smoothened signaling pathway; and regulation of sprouting angiogenesis. Predicted to be located in nucleus. Is expressed in several structures, including axis; gonad; hindbrain neural keel; nervous system; and somite. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 9. Orthologous to human SOX11 (SRY-box transcription factor 11).

NR:

description
transcription factor SOX-11

GO: NA

KEGG:

id description
K09268 SOX11_12; transcription factor SOX11/12 (SOX group C)

RNA

RNA id representative length rna type GC content exon number start site end site
TU197864 False 1594 lncRNA 0.37 2 17385507 17430741
TU197866 False 1596 lncRNA 0.37 2 17385507 17430741
XM_026933757.2 True 3046 mRNA 0.46 1 17427706 17430751

Neighbor

gene id symbol gene type direction distance location
colec11 colec11 coding upstream 194768 17187256 ~ 17190739 (+)
myo6b myo6b,LOC108269576,LOC108425641,LOC107741840,LOC107594692 coding upstream 250027 17098219 ~ 17135480 (+)
senp6b LOC108270485 coding upstream 288445 17089656 ~ 17097062 (+)
mapre3a LOC108270331,LOC108425644,LOC107594695,LOC107666269,LOC107679788,LOC100704238,LOC102790188 coding upstream 297232 17081064 ~ 17088275 (+)
dpysl5a dpysl5,dpysl5a,LOC107741845,LOC107666251,LOC107752745,LOC107679787,LOC107594693 coding upstream 306374 17061320 ~ 17079133 (+)
rsad2 rsad2 coding downstream 195507 17626258 ~ 17628763 (+)
rnf144aa rnf144a,rnf144aa,LOC107655314,LOC107752753,LOC107553279 coding downstream 202419 17633170 ~ 17672784 (+)
adam17a adam17,LOC108270063 coding downstream 243210 17673961 ~ 17694745 (+)
mboat2a mboat2,mboat2a,LOC108269814,LOC107553282,LOC107752759 coding downstream 369450 17800201 ~ 17866656 (+)
LOC117598336 NA coding downstream 494955 17925706 ~ 17926020 (+)
G167123 NA non-coding upstream 23267 17362026 ~ 17362240 (+)
LOC117598255 NA non-coding upstream 224016 17155710 ~ 17161491 (+)
G166978 NA non-coding upstream 276062 17057135 ~ 17109445 (+)
G166980 NA non-coding upstream 415581 16967452 ~ 16969926 (+)
G166895 NA non-coding upstream 579696 16805127 ~ 16805811 (+)
G167271 NA non-coding downstream 493962 17924713 ~ 17988416 (+)
LOC113538631 NA non-coding downstream 641424 18072175 ~ 18087997 (+)
G167395 NA non-coding downstream 658853 18089604 ~ 18089814 (+)
G167428 NA non-coding downstream 695684 18126435 ~ 18127367 (+)
G167546 NA non-coding downstream 855451 18286202 ~ 18288307 (+)
G166976 NA other upstream 328696 17055674 ~ 17056811 (+)
asxl2 asxl2,LOC102788176,LOC107600867 other upstream 418166 16953173 ~ 16967341 (+)
crip1 crip1,LOC103034058,LOC106611282 other upstream 519305 16860822 ~ 16866202 (+)
G166338 ahsa1,LOC107719296,LOC108425677 other upstream 1392631 15990829 ~ 15992876 (+)
slc35f4 slc35f4,LOC107559881,LOC107586844,LOC107668528,LOC107664436,LOC106593636 other upstream 1994937 15365051 ~ 15390570 (+)
itgb1bp1 itgb1bp1,LOC107707691,LOC107655317 other downstream 269716 17700467 ~ 17706832 (+)
kidins220a LOC108269813,LOC108425633 other downstream 436665 17867416 ~ 17922751 (+)
ldah ldah other downstream 899716 18330467 ~ 18374080 (+)
prlh2r LOC108269650,LOC108425589 other downstream 1138628 18569379 ~ 18578308 (+)
G168191 NA other downstream 2244162 19674913 ~ 19687591 (+)

Expression


Co-expression Network