itgb1bp1 (itgb1bp1,LOC107707691,LOC107655317)


Basic Information

Item Value
gene id itgb1bp1
gene name itgb1bp1,LOC107707691,LOC107655317
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 17700467 ~ 17706832 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU197931
TTTATGTTCTTGAGCTGAAGAGCAGAAAGTTTGTCTCCCAGGCCGCGGCTCCTTTAAGTTCAGCTGGGTGGAGTCGCACAGGAAGTGAAGTGTCAACGCTAGACTCgccaaaacacagagagagcCGGAGACGTGGTGCTGTGATGGTCCTGGACCTCGGTACGCTTTTAAACTGGTAACCACCACACGTCCAGAGCAGAGCGttggttggagtgtgtttagaGGACTGGTGTTAGGAAGCGTGGAGTGCTGGCGTCATGGTGAAGAATGTGGTGTCGTGGTGAAGAATGTTCCGCAAGGGCAAGAAGcgccacagcagcagcagctcccaAAGCAGTGAGATCAGCACCAAGAGCAAGTCTGTAGACTCCAGTCTGGGAGGCCTGTCCAGGTCCAGCACAGTCGCCAGCCTGGATACAGACTCCACCAAGAGCTCAGGTAACAGTGCGTCCGAGACATGTGCTGAGTTCAGAGTGAAATATTTGGGAGCTGTTGAGAAGCTGGACTTTGAGATGAGCAAAACCCTCCAGGAGCCATTAGACCTGATCAGCTATATTGACGCAGCTCAGACGGAAAGTTGCCATTTGTGCCTGGAGAAGAGGAGATGATCCTGGGAGTGTCCAAGTATGGAGTCAAAGTGGCGTCTTTGGATCAGTGTGACGTGTTACACCGCCACCCTCTCTACCTGATAGTGCGCATGCTGTGCTATGATGACGGTCTTGGAGCTGGGAGGAACCTCCTGGCACTCAACACCACCGATGCCAAGCAGCAGGAGTGCAGCATCTGGGTCTACCAGTGCAGCAATGCGGAACAAGCTCAAGCCATCTGTAAAGTGCTCTCAGCTTCCTTTGACTGTGTTCTGGCTTCGGAGAAATCCTGAGGCCCGTCTCTCCTGTGAAGGCCAGGCCTCTAACAAAGGGGTCAAATTGGCATAACGGCATGTAATGTTTACAGTGTCCATAGAAGTCACCCTTTTCACCCCGAACCGAGGCCATTTTTGCTCCTCCTCTTGTAGCGGTTAAGTTCAGGATTAAAACTAAGGTATATCTGCTCCATGATCAGGATATAAGAGCGACCTCTGCAAGGAGCAGTGTTTATATCAGTCATGTACATTCTATCCTCTGCTTCTGATATTACAATCTCCAGCATCCAAAGGCTTTCCAGGCCAGCCTTTAGCCTaatttaatcttatttaatgtaaatatacactGAGCTCAGCATATGTTCTCTGCTGTGCTCCAGGAACTGTGCATCTCATGGGATTAATGCTATCAGTGGTACAGTATTTACAGAGCACAAGGACTTATTCATCAAACATGCTGTAAATTCCAGCTATCTGTAGCTCTGTGGGTGGAAGGTTGGGGAGGTCTGCTGTTCACTGCTGTTTGTAACAGACCACCCTCTCCTGTCCTCTCATAAATCCTGGTCCAGATGGGACTGGATCAGTTCATACGGTACTATAACCTCAAAAACGGTACAATAAACTTTTTAATTGATTTGAATTTattggagg
>XM_026933708.2
GAACATGTTTGACCACACAGCACTGCGCCCTTGTTTATGTTCTTGAGCTGAAGAGCAGAAAGTTTGTCTCCCAGGCCGCGGCTCCTTTAAGTTCAGCTGGGTGGAGTCGCACAGGAAGTGAAGTGTCAACGCTAGACTCgccaaaacacagagagagcCGGAGACGTGGTGCTGTGATGGTCCTGGACCTCGGTACGCTTTTAAACTGGTAACCACCACACGTCCAGAGCAGAGCGttggttggagtgtgtttagaGGACTGGTGTTAGGAAGCGTGGAGTGCTGGCGTCATGGTGAAGAATGTGGTGTCGTGGTGAAGAATGTTCCGCAAGGGCAAGAAGcgccacagcagcagcagctcccaAAGCAGTGAGATCAGCACCAAGAGCAAGTCTGTAGACTCCAGTCTGGGAGGCCTGTCCAGGTCCAGCACAGTCGCCAGCCTGGATACAGACTCCACCAAGAGCTCAGGTAACAGTGCGTCCGAGACATGTGCTGAGTTCAGAGTGAAATATTTGGGAGCTGTTGAGAAGCTGGACTTTGAGATGAGCAAAACCCTCCAGGAGCCATTAGACCTGATCAGCTATATTGACGCAGCTCAGCAAGACGGAAAGTTGCCATTTGTGCCTGGAGAAGAGGAGATGATCCTGGGAGTGTCCAAGTATGGAGTCAAAGTGGCGTCTTTGGATCAGTGTGACGTGTTACACCGCCACCCTCTCTACCTGATAGTGCGCATGCTGTGCTATGATGACGGTCTTGGAGCTGGGAGGAACCTCCTGGCACTCAACACCACCGATGCCAAGCAGCAGGAGTGCAGCATCTGGGTCTACCAGTGCAGCAATGCGGAACAAGCTCAAGCCATCTGTAAAGTGCTCTCAGCTTCCTTTGACTGTGTTCTGGCTTCGGAGAAATCCTGAGGCCCGTCTCTCCTGTGAAGGCCAGGCCTCTAACAAAGGGGTCAAATTGGCATAACGGCATGTAATGTTTACAGTGTCCATAGAAGTCACCCTTTTCACCCCGAACCGAGGCCATTTTTGCTCCTCCTCTTGTAGCGGTTAAGTTCAGGATTAAAACTAAGGTATATCTGCTCCATGATCAGGATATAAGAGCGACCTCTGCAAGGAGCAGTGTTTATATCAGTCATGTACATTCTATCCTCTGCTTCTGATATTACAATCTCCAGCATCCAAAGGCTTTCCAGGCCAGCCTTTAGCCTaatttaatcttatttaatgtaaatatacactGAGCTCAGCATATGTTCTCTGCTGTGCTCCAGGAACTGTGCATCTCATGGGATTAATGCTATCAGTGGTACAGTATTTACAGAGCACAAGGACTTATTCATCAAACATGCTGTAAATTCCAGCTATCTGTAGCTCTGTGGGTGGAAGGTTGGGGAGGTCTGCTGTTCACTGCTGTTTGTAACAGACCACCCTCTCCTGTCCTCTCATAAATCCTGGTCCAGATGGGACTGGATCAGTTCATACGGTACTATAACCTCAAAAACGGTACAATAAACTTTTTAATTGATTTGAATTTa

Function

symbol description
itgb1bp1 Predicted to act upstream of or within integrin-mediated signaling pathway. Orthologous to human ITGB1BP1 (integrin subunit beta 1 binding protein 1).

NR:

description
integrin beta-1-binding protein 1 isoform X2

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process

KEGG:

id description
K20058 ITGB1BP1; integrin beta-1-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU197931 False 1513 TUCP 0.49 7 17700500 17706832
XM_026933708.2 True 1543 mRNA 0.49 7 17700467 17706825

Neighbor

gene id symbol gene type direction distance location
adam17a adam17,LOC108270063 coding upstream 5722 17673961 ~ 17694745 (+)
rnf144aa rnf144a,rnf144aa,LOC107655314,LOC107752753,LOC107553279 coding upstream 27683 17633170 ~ 17672784 (+)
rsad2 rsad2 coding upstream 71704 17626258 ~ 17628763 (+)
colec11 colec11 coding upstream 509728 17187256 ~ 17190739 (+)
myo6b myo6b,LOC108269576,LOC108425641,LOC107741840,LOC107594692 coding upstream 564987 17098219 ~ 17135480 (+)
mboat2a mboat2,mboat2a,LOC108269814,LOC107553282,LOC107752759 coding downstream 93369 17800201 ~ 17866656 (+)
LOC117598336 NA coding downstream 218874 17925706 ~ 17926020 (+)
nhsl1a LOC108270058,LOC108425629 coding downstream 425592 18132424 ~ 18187362 (+)
apoba apob,LOC107697732 coding downstream 586987 18293819 ~ 18316382 (+)
LOC113539017 NA coding downstream 613138 18319970 ~ 18320076 (+)
LOC113539009 NA non-coding upstream 266246 17412038 ~ 17434221 (+)
G167123 NA non-coding upstream 338227 17362026 ~ 17362240 (+)
LOC117598255 NA non-coding upstream 538976 17155710 ~ 17161491 (+)
G166978 NA non-coding upstream 591022 17057135 ~ 17109445 (+)
G166980 NA non-coding upstream 730541 16967452 ~ 16969926 (+)
G167271 NA non-coding downstream 217881 17924713 ~ 17988416 (+)
LOC113538631 NA non-coding downstream 365343 18072175 ~ 18087997 (+)
G167395 NA non-coding downstream 382772 18089604 ~ 18089814 (+)
G167428 NA non-coding downstream 419603 18126435 ~ 18127367 (+)
G167546 NA non-coding downstream 579370 18286202 ~ 18288307 (+)
sox11a sox11b,LOC108269454 other upstream 269716 17385507 ~ 17430751 (+)
G166976 NA other upstream 643656 17055674 ~ 17056811 (+)
asxl2 asxl2,LOC102788176,LOC107600867 other upstream 733126 16953173 ~ 16967341 (+)
crip1 crip1,LOC103034058,LOC106611282 other upstream 834265 16860822 ~ 16866202 (+)
G166338 ahsa1,LOC107719296,LOC108425677 other upstream 1707591 15990829 ~ 15992876 (+)
kidins220a LOC108269813,LOC108425633 other downstream 160584 17867416 ~ 17922751 (+)
ldah ldah other downstream 623635 18330467 ~ 18374080 (+)
prlh2r LOC108269650,LOC108425589 other downstream 862547 18569379 ~ 18578308 (+)
G168191 NA other downstream 1968081 19674913 ~ 19687591 (+)
LOC113538915 c9h15orf52 other downstream 2015948 19722780 ~ 19766581 (+)

Expression


Co-expression Network