G167579


Basic Information

Item Value
gene id G167579
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18302105 ~ 18303339 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU198385
tgtgtgtgtgttgacagcCTACTTACCTACTTTCTCCAGTTAGGGGGTAGTAGGGGGAATGGGCAGAGTTGCTATTGTAGTAGTTTAGTATGGTGCAGTACTTCATTCCAGGGAAGATGGGGCTGCATTGTGTGGAGTCAGTTTTGTCTTCCTCATTGCGAGACACTTTCTTGACCATAGTGGAAGTGATTGAAAAGAGCTCATTGCTGTTTTTAAAGGACATAATATAAACTGTTAAAGTGAAAActtatatactttatttaatctGATGCATTGTTAACTACATCTTTATGCTATTaagatcattttattttcatttttcttagtCATAACTGTATATCACAGATAGAACAAGGCCATTCATGTTCTTTAGACTGACAGTGGCAGAAGCATCCAGCTGTAGAGCAGGAACAGCCATCTCTAGTTCTAGCATACCATCTTCCATTGATTCCTTTACACTAAATATAACAGTAGTTAATTTTCAAAAGCCAACCAGTTTGATTGTGCCAAAATTACTAAGTTACTAAAACATTATAGTTTCTACCTAGATCTTTTTGGATTGCACTAAATATGATATACATTCAGCTCCAGAAATACTGGcccccttggtaaagatgggcATAAAAGGTTCTGAAAAATGCCTTTGTGGTCAACTGGCTTAATCTTGCACTGAAAGAAATCTACTTAGAAACTTTAAGTATACTCTTAAGCATTCaaccatgacttcctgtttcactggggGATAAATATGAGGTGACACAAAATTCTCTTAGTCATTCATCAAAATGTGGAATTAGAGAATCAGAGAATAGTGAATTTTTGCCAGACTAAGCTAATTAACAAAGACATTTATTCATTACCTTTCTTACCCATCTTACCAAGGGCTTTATTAGGAAAAGACATTTTGGGGTTCTaaatttaaccatttttaaTGTGCTAACCAAAGAATGCATGTTGTTGGGAAAGCAAATGCCACTGTtgtaaatattatgtattttttttatcctaccTGATGCTTAGCAGTTGGGTGTTCTCCTTTGTTACAGGGATAGAAAGCTTGACTTGGTTGGCACTCATTGTGATTTTGGAATCCAGGCCACTCTCATggtatatgtttgtgtgcattctAATACCAGCATCCAcaaattttgggaaatagatGCCCATCTGGGTAACAAACTCCACTCCCATCGATGGCTTGAATGCGAGCTCTTG

Function

NR:

description
zinc finger Y-chromosomal protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198385 True 1215 lncRNA 0.37 2 18302105 18303339

Neighbor

gene id symbol gene type direction distance location
c10h1orf115 NA coding downstream 11630 18287763 ~ 18290475 (-)
alkal2b LOC108425626 coding downstream 52873 18243360 ~ 18249232 (-)
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding downstream 71630 18191959 ~ 18230475 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding downstream 375055 17924721 ~ 17927050 (-)
asap2a asap2 coding downstream 521053 17708618 ~ 17781052 (-)
yy1a yy1a,LOC100304682,LOC108425622,LOC103039658,LOC107674084,LOC107594811,LOC107733162,LOC108258103 coding upstream 96372 18399711 ~ 18403969 (-)
evla LOC108425620,LOC108270303 coding upstream 112039 18415378 ~ 18437153 (-)
eml1 eml1 coding upstream 156133 18459472 ~ 18512607 (-)
pkdccb LOC108270133 coding upstream 216558 18519897 ~ 18525899 (-)
rpusd2 rpusd2,LOC103399345 coding upstream 248344 18551683 ~ 18556050 (-)
G167577 NA non-coding downstream 5550 18294983 ~ 18296555 (-)
G167572 NA non-coding downstream 30289 18271603 ~ 18271816 (-)
G167250 NA non-coding downstream 629332 17669650 ~ 17672773 (-)
G167152 NA non-coding downstream 765330 17536419 ~ 17536775 (-)
LOC117598352 NA non-coding downstream 835331 17452366 ~ 17466774 (-)
G167580 NA non-coding upstream 13139 18316478 ~ 18316699 (-)
G167617 NA non-coding upstream 95832 18399171 ~ 18399424 (-)
G167618 NA non-coding upstream 101214 18404553 ~ 18404775 (-)
G167684 NA non-coding upstream 155116 18458455 ~ 18458794 (-)
G167783 NA non-coding upstream 260632 18563971 ~ 18564379 (-)
cmpk2 cmpk2 other downstream 677571 17615738 ~ 17624534 (-)
htr1b htr1e,LOC108269541 other downstream 1054282 17166868 ~ 17247823 (-)
mideasb elmsan1 other downstream 1403375 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 2539387 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 2638610 15633002 ~ 15663495 (-)
G167566 apob other upstream 2404 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 72064 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 296956 18600295 ~ 18642889 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other upstream 536276 18839615 ~ 18847696 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other upstream 658369 18961708 ~ 18966613 (-)

Expression


Co-expression Network