G167580


Basic Information

Item Value
gene id G167580
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18316478 ~ 18316699 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU198386
ctgttctgttcccTTTTTTGCAAGTTGACTGTCTTGATTGACTTGTTTGATAATGATTATTGAGCCCACattctgtttctgttcttcCTACAGGTATCTAACAGTCCCTATTCAATACATGGAAACAGTGTTACAGAATTTGAATCAGTTCATTGGCTCCTTAAACATCTTTATCCTTGAATTGGATTTTAACTCAGTTGCGAGGtcaattttaatacaaat

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198386 True 222 lncRNA 0.35 1 18316478 18316699

Neighbor

gene id symbol gene type direction distance location
c10h1orf115 NA coding downstream 26003 18287763 ~ 18290475 (-)
alkal2b LOC108425626 coding downstream 67246 18243360 ~ 18249232 (-)
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding downstream 86003 18191959 ~ 18230475 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding downstream 389428 17924721 ~ 17927050 (-)
asap2a asap2 coding downstream 535426 17708618 ~ 17781052 (-)
yy1a yy1a,LOC100304682,LOC108425622,LOC103039658,LOC107674084,LOC107594811,LOC107733162,LOC108258103 coding upstream 83012 18399711 ~ 18403969 (-)
evla LOC108425620,LOC108270303 coding upstream 98679 18415378 ~ 18437153 (-)
eml1 eml1 coding upstream 142773 18459472 ~ 18512607 (-)
pkdccb LOC108270133 coding upstream 203198 18519897 ~ 18525899 (-)
rpusd2 rpusd2,LOC103399345 coding upstream 234984 18551683 ~ 18556050 (-)
G167579 NA non-coding downstream 13139 18302105 ~ 18303339 (-)
G167577 NA non-coding downstream 19923 18294983 ~ 18296555 (-)
G167572 NA non-coding downstream 44662 18271603 ~ 18271816 (-)
G167250 NA non-coding downstream 643705 17669650 ~ 17672773 (-)
G167152 NA non-coding downstream 779703 17536419 ~ 17536775 (-)
G167617 NA non-coding upstream 82472 18399171 ~ 18399424 (-)
G167618 NA non-coding upstream 87854 18404553 ~ 18404775 (-)
G167684 NA non-coding upstream 141756 18458455 ~ 18458794 (-)
G167783 NA non-coding upstream 247272 18563971 ~ 18564379 (-)
G167786 NA non-coding upstream 254804 18571503 ~ 18571893 (-)
G167566 apob other downstream 271 18305743 ~ 18316207 (-)
cmpk2 cmpk2 other downstream 691944 17615738 ~ 17624534 (-)
htr1b htr1e,LOC108269541 other downstream 1068655 17166868 ~ 17247823 (-)
mideasb elmsan1 other downstream 1417748 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 2553760 15715560 ~ 15762718 (-)
gdf7 LOC108270114 other upstream 58704 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 283596 18600295 ~ 18642889 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other upstream 522916 18839615 ~ 18847696 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other upstream 645009 18961708 ~ 18966613 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 1270225 19586924 ~ 19588902 (-)

Expression


Co-expression Network