G167909


Basic Information

Item Value
gene id G167909
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18837091 ~ 18837322 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU198785
CTTATCCCCACAGTTCCAATAGCCTCTGGGTTgggcaaatttgtgatatttattCGCATGGCACGGTTGAAACATGTCTGCTCCATGCTGCCCAGTAAGTCTTCAGTATCAgcttggtcagggttgcagtgatTCTGGAGCTCAGTGAATGCTGGGCGCAAGgcgggagaattcaccccggatTAGACGTCAGTCCACCGCAGTGAGTCGCACATGTAACTTGATCCTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198785 True 232 lncRNA 0.50 1 18837091 18837322

Neighbor

gene id symbol gene type direction distance location
adprs adprhl2,LOC107561543,LOC107697751,LOC107733180,LOC107594801,LOC107674064 coding upstream 4975 18825313 ~ 18832116 (+)
heatr4 heatr4 coding upstream 17408 18812257 ~ 18819683 (+)
LOC113538626 LOC108269552,LOC103041189,LOC108436737 coding upstream 27633 18803254 ~ 18809458 (+)
itpka itpka coding upstream 155215 18670442 ~ 18681876 (+)
ccdc32 c9h15orf57 coding upstream 268415 18563403 ~ 18568676 (+)
cinp cinp coding downstream 13575 18850897 ~ 18854826 (+)
nubpl nubpl,LOC107733195 coding downstream 96575 18933897 ~ 18948761 (+)
arhgap5 arhgap5,LOC107733129,LOC107594795,LOC107719447,LOC107561551 coding downstream 120442 18957764 ~ 18992437 (+)
eef1akmt2 mettl10 coding downstream 178872 19016194 ~ 19020616 (+)
insyn2ab LOC108269663 coding downstream 254039 19091361 ~ 19124235 (+)
G167735 NA non-coding upstream 188529 18648355 ~ 18648562 (+)
G167730 NA non-coding upstream 193673 18642292 ~ 18643418 (+)
G167698 NA non-coding upstream 294584 18542308 ~ 18542507 (+)
G167665 NA non-coding upstream 323094 18513739 ~ 18513997 (+)
G167621 NA non-coding upstream 367087 18459498 ~ 18470004 (+)
G167913 LOC107572756,LOC107690120,LOC107579140 non-coding downstream 2287 18839609 ~ 18841610 (+)
G168011 NA non-coding downstream 139694 18977016 ~ 18978476 (+)
G168175 NA non-coding downstream 685832 19523154 ~ 19524855 (+)
G168207 NA non-coding downstream 759101 19596423 ~ 19596967 (+)
G168504 inafm2 non-coding downstream 935568 19772890 ~ 19774666 (+)
prlh2r LOC108269650,LOC108425589 other upstream 258783 18569379 ~ 18578308 (+)
ldah ldah other upstream 463011 18330467 ~ 18374080 (+)
kidins220a LOC108269813,LOC108425633 other upstream 914340 17867416 ~ 17922751 (+)
itgb1bp1 itgb1bp1,LOC107707691,LOC107655317 other upstream 1130259 17700467 ~ 17706832 (+)
sox11a sox11b,LOC108269454 other upstream 1406340 17385507 ~ 17430751 (+)
G168191 NA other downstream 837591 19674913 ~ 19687591 (+)
LOC113538915 c9h15orf52 other downstream 885458 19722780 ~ 19766581 (+)
zfyve19 zfyve19 other downstream 1042413 19879735 ~ 19886509 (+)
LOC113538658 NA other downstream 1076021 19913343 ~ 19922486 (+)
G168650 cep170b other downstream 1205155 20042477 ~ 20042935 (+)

Expression


Co-expression Network