LOC113538624 (LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130)


Basic Information

Item Value
gene id LOC113538624
gene name LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18839615 ~ 18847696 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU198855
CCGCAACTGAATCTGTTATTCATCTGCGTCCCTCTGCTGTGTCCTttcctccattttcctcTTCTACTATGGGTGTGGCAGACGAACTGTGCAATGAGCTGTTCCGTTGGATTGAACAGCAGGAGCAATGTGCAGATCATCTCATGGCTTTGGCAACTGAGCTGGAGGAGATGAGGGAGGTGATGACTACAGGCCAGTTGGTGGGAAACACAGCAACTGTGCTTGGGTCTGCCACCCTAGTTGGAACAGGCATTGCAACATTGCTGACTGGAGGCCTGGCTGCACCCTTGCTGGTAGCGGCAGCTGGTATCACAGTCGGAGCGGGTACTGCAACTAGTCTTACACTTTCGCTTGTGGAGAAATGGAAATCCagtaaaacaatgaaaaatgcagAGAAGACTGCTGATCAAATCACACAGATTCAGAACAATATTGAAAGGCACCAGAAGAAACTCCAGAAGGAGTGTGAGAGTCAAGGCTTTAAAGAGTCATCCTCCGATGACCTGCAGTGTGAAATCACAGCGAGAATCCTGAGA
>XM_026933830.2
CTGAATCTGTTATTCATCTGCGTCCCTCTGCTGTGTCCTttcctccattttcctcTTCTACTATGGGTGTGGCAGACGAACTGTGCAATGAGCTGTTCCGTTGGATTGAACAGCAGGAGCAATGTGCAGATCATCTCATGGCTTTGGCAACTGAGCTGGAGGAGATGAGGGAGGTGATGACTACAGGCCAGTTGGTGGGAAACACAGCAACTGTGCTTGGGTCTGCCACCCTAGTTGGAACAGGCATTGCAACATTGCTGACTGGAGGCCTGGCTGCACCCTTGCTGGTAGCGGCAGCTGGTATCACAGTCGGAGCGGGTACTGCAACTAGTCTTACACTTTCGCTTGTGGAGAAATGGAAATCCagtaaaacaatgaaaaatgcagAGAAGACTGCTGATCAAATCACACAGATTCAGAACAATATTGAAAGGCACCAGAAGAAACTCCAGAAGGAGTGTGAGAGTCAAGGCTTTAAAGAGTCATCCTCCGATGACCTGCAGTGTGAAATCACAGCGAGAATCCTGAGAGCCATGGCCAAACGGAGTGGTAGAGATCTGCCCCTCAGTCGCCTAAGGCACATCTTGAGAAGTGATGGCATGTATACTCATTACAGATATCCAGAGTTTAATCCAGACATTGCATTCTTCTGCACTGTCAGTTCTTTGCTAGCATTCCTTGGATATTCTGCCGTCTTTCTGAAAACAGCAGcaacaaaaggacaaaaatattatactcCACTTTTTGTGACAACTACTGAAGGAATGGCTGCTCTTTCACTGAAAGCTGTGTTAAAGGGAACAGGCCAGGTCACAGGAGGAATCTTTGGGCTGATGTTCACAGTTCCTGATCTGATTAATAACTGTGAAgaactgattaaaaacaaacatcagacTGAAGCTAGCACATTTCTGAAGACAAAAGCTAATGAAATCCGTGAGGctgtgaaaaaattaaaaaagcaattGAATGAATTACAAGAGATGCTCAATCAAATCCCTGAAATGGAGTGTCACATTGATTTGGCTCAGGAGATGTTTGGATCTCAAATATACACACGAGGCTCCATTTGTATGGAGTATAAACAGACCCGAAAGCAGGACAGGAAGACACAGAGGTTTATTCTCCTATGCACAAAAGACATAGGAGTAACTGAGTATGGTTCCACAGGTAAAGACAAATCAGGTGACAACAAGAAcaaaagacagaagaagaagGCTACTTCAACTGAAGACAGGTACCTTAACCAGCAGAGCAAATCTGCTATTCAGAGGAAACCTGCTTTTCAGAGGAAACCACCACACAAGTCTAAATCAAAAGTAAAGGAATTTCAGTTCCGCCTTCCTAAAATAATGATGTCTAATGTGCGTTCTCTTCCAAACAAAGTAGAGGAGCTCAAAGAAATGATGGAAGATGTGGAAAACTTTAACTTCGATCTGATGTTCTTCACAGAGACATGGTTGAATAGGAACTCACCCAGTATTAGCTTGGAGGGATATACGTCTTTCCGGGTTGATCGTGATGCACGGCTTACTCAGAAAAGTAGAGGAGGGGGGCTGATAATGCTTGTGAATAAGGACTGGGCGACTGATGTGGAGGTGGAAAACATCATGATTACTCGAGATTATGAGTTAATGGTTGTGTCCGTTATACCACATGACCACCCTGAGGGTGCTCCACCACTTACCTTCATCCATGTGTATATCCCTCCAGGACCTAATATTACTCAAGCTGCCAATGAGATTGCTGGTTTTTACTATGATGTTCTGGAGAAGTATCCTGGTGGTCCTGTTTTCTTGTTGGGTGATTTCAACCAGTGTGACATCACTCATCTCTTGGACCTGGAGCAATATGTCACATGCCCAACCAGATGCAATAACACCCTGGATAAGTGCTATGGGAATGTGCCAGAGGCTTACAGATCTGAATGCAGTCCCCCGCTTGGCCGGTCAGACCACAATGTCATTCATTTGATTCCTAAAGACAAGTCGGATAAAAGTCACCCTTCCAAAGATGAGAAGTGTACGCATGACAATACCAAACCCAGAAAGCAATGAGAGGCTGCGCAACagttgtagttctgtgttgtttttatgtagcaccatggtcctggaggaacgttgtttcgtttcactgtgtactgtactagtaTATGATAGCTTGTTTTGTTCTATAGATGTAGGTGGCATCTAACTGCTTTAAATTAACTTATTGAGTATAAAAAGTCAttgagaaagaagaagagaggattATAGTGGGAACTGGTCTGAATAGTGGCACAACAATGAGGAacaacatgaggaaaaaacatctcatttgaatgaagaaaattaaatgaagGAAACTGTTGCTTGATATGCTTAAACTATGagatttaaaaagaagaaatgctaCCACCTTGCTAGTCTACAATTTTAATCAAACTAATAGCTTAGCTACTTATAGTAATACTACTAAAAGATATTTGATCACTGAAGTTTACCATTATCACCAAAAATCACCTGTAAATGTGTTGATTGCATTGCAAGGACCAGGACTCATCAAAACACAGAATGTGCATGGTGCAGTCTGGCTGTGAATGGTACCATTAATTATTCAATGAAGAGGAAAACAGGAGAGGATTCACAAGCTCTGGGGTGGAGGAAGTCCACTGAAGAATCCTCTGTAATCCAAGTGCAAGATAAAACATCCTGAGGCGAGGATGGAAATTGTTAACTTCAAGGAAATGCCTTATATACTAAATCCCCAGGAAGAATGGTTCAGTGGGTTCACTGTAAACCATTCGCCTTCCTGAACTCTCTCAATCTACTTTTATTTGATactgataaacacacaccagtTAGTATCTAACTTTGAGTGCAACCCTAATCATAAACTGTAGCCTGTTATGTAAAACATTGAGAGTATATATTTTACCCTCTGTTAAGACTTCTAGTGGAACagagagtaaagtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198855 False 536 TUCP 0.49 2 18843803 18847696
XM_026933830.2 True 2976 mRNA 0.42 4 18839615 18847690

Neighbor

gene id symbol gene type direction distance location
haus2 haus2 coding downstream 14394 18822276 ~ 18825221 (-)
rpap1 rpap1 coding downstream 40186 18778480 ~ 18799429 (-)
ltk ltk coding downstream 86828 18683805 ~ 18752787 (-)
ivd ivd,LOC107719458 coding downstream 173295 18659288 ~ 18666320 (-)
pcmtl pimt,pcmtl,LOC108425617,LOC105015970,LOC107392292,LOC107719513 coding downstream 276249 18556118 ~ 18563366 (-)
znf839 znf839 coding upstream 9339 18857035 ~ 18866636 (-)
vsx2 vsx2,LOC107697755 coding upstream 24656 18872352 ~ 18881325 (-)
lin52 lin52,LOC107594798 coding upstream 40469 18888165 ~ 18900872 (-)
pomt2 pomt2,LOC107594797 coding upstream 54526 18902222 ~ 18917227 (-)
LOC113538579 LOC108270446 coding upstream 70836 18918532 ~ 18931357 (-)
G167883 NA non-coding downstream 36922 18802441 ~ 18802693 (-)
G167802 NA non-coding downstream 242729 18596581 ~ 18596886 (-)
G167786 NA non-coding downstream 267722 18571503 ~ 18571893 (-)
G167783 NA non-coding downstream 275236 18563971 ~ 18564379 (-)
G167684 NA non-coding downstream 380821 18458455 ~ 18458794 (-)
LOC113538783 NA non-coding upstream 432582 19280278 ~ 19285841 (-)
G168304 NA non-coding upstream 472142 19319838 ~ 19426679 (-)
LOC113538592 NA non-coding upstream 593393 19441089 ~ 19449728 (-)
G168354 NA non-coding upstream 646367 19494063 ~ 19498688 (-)
G168399 NA non-coding upstream 738646 19586342 ~ 19586548 (-)
bahd1 bahd1,LOC108436768 other downstream 196726 18600295 ~ 18642889 (-)
gdf7 LOC108270114 other downstream 457160 18375403 ~ 18382455 (-)
G167566 apob other downstream 523408 18305743 ~ 18316207 (-)
cmpk2 cmpk2 other downstream 1215081 17615738 ~ 17624534 (-)
htr1b htr1e,LOC108269541 other downstream 1591792 17166868 ~ 17247823 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other upstream 114012 18961708 ~ 18966613 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 739228 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 741672 19589368 ~ 19595214 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other upstream 752434 19600130 ~ 19609778 (-)
srp14 srp14,LOC106610862 other upstream 1165883 20013579 ~ 20018717 (-)

Expression


Co-expression Network