G168011


Basic Information

Item Value
gene id G168011
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18977016 ~ 18978476 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU198910
CCGATGTGTTTTATAGCTACATGTTGTagagtcagttcctgttatcacttatagaTATGCATAATAGTAGCTTTGTTATAGACAGTTGTTTCCTTACAAGCCTCtcctttttactttcttttgaAATCAATAAAacgaaaaatgcagcttgccgTGTTGATTAGAAATTGGAACGTCCTCTGTCCTGAGCACTTTCCCGTGGTGGAAAACCTGCAGCACGTGTGGAGGAACATGTATGTTTAACACCTattataaacaatgcaaaatggtttttatttgtaaaataaatcatgctatttattttataaccaCTAATGATGAAGCAGTGTTATTTCTATATTGGGTTCAGTGTTCTTTGTATTGAAATTGTTGCACTCTCATTTATATGCTCAAGCAGTATTTCTCGAGGTATAAGTGGAGTGTTTAATACaggctgcaatttttttgttttatgcatgCATCCTCTACATCAAGGAGCCATGGCCACATGGGAAGCAGACCTAGTTATAAAAGGTTACACTCTCCATGTGACCTTTATCTCAGCACAGTGTGATCCTGCACAAACAAGCACAGCACCATTTATAGAATCCGCTGTTAGTTTGAAATGTGGATGTGCCGTTCTGACAGAAACGTGTGTTGTAGTGATTACtattaaaaagctttttagTGCATTCCAGTAGTACTGACGCAGTCCCTGGAAGAGCCTGTGTTGTGAGTCATGCCTGAGATTTGTGTCGCTGCTGTGATCTGACAGAAAGCTTCCTTGAGGAAtaattaggggtgtaacaatacataCAAATCCAATTCAATATGATACGGTAGTCTCGCAATACAATACATTATAGATACACTAGAAATCAGCATTGCATGAATATGGGCCTTAGACTTCTATTTTCAGTcgattaaaacattcaacattataaaagtagAATAGCTGAAACGTAATAATGAGACAGTGTTAGCAGCAGGTAAAGAAACAACATCTGTGCCTTACTATGtgacaaaattaaacatggctaaCTTTCACATGTGTGACTTACAAGGTGACGTGTCTGAAGCATGGAGCTTTTCCCATTCTGCTCTTAGTTAGTTGTGCTATCAGATTCACGCAGCTCTCTGTAGCcctagatgtgtttttgaatcctgtGTTCTCTGCTATATCATCTCCAATATGAAATTCCCAGTGGCCATGGTGGCCATGGTGATTTCTTTAGCCCGGATTGAATCAGTGAGGAAGGGCTGCCTGAATGCTGCAGAGAGATTgttgccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgtATGTTTGCGATATTAGTGATAGTGTATTTGGGGATTCAGCACACTCTAACGTTTCGGTCCACCAATCCCTGGGCATCAGCATTGTAACTTACTGGGAGGCCAAAGTGCTCCCACACACCAGACCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198910 True 1431 lncRNA 0.40 2 18977016 18978476

Neighbor

gene id symbol gene type direction distance location
nubpl nubpl,LOC107733195 coding upstream 28255 18933897 ~ 18948761 (+)
cinp cinp coding upstream 122190 18850897 ~ 18854826 (+)
adprs adprhl2,LOC107561543,LOC107697751,LOC107733180,LOC107594801,LOC107674064 coding upstream 144900 18825313 ~ 18832116 (+)
heatr4 heatr4 coding upstream 157333 18812257 ~ 18819683 (+)
LOC113538626 LOC108269552,LOC103041189,LOC108436737 coding upstream 167558 18803254 ~ 18809458 (+)
eef1akmt2 mettl10 coding downstream 37718 19016194 ~ 19020616 (+)
insyn2ab LOC108269663 coding downstream 112885 19091361 ~ 19124235 (+)
LOC113538933 c9h10orf90,LOC107594852 coding downstream 226376 19204852 ~ 19224841 (+)
adam12 LOC108270250,LOC108436745 coding downstream 249070 19227546 ~ 19352313 (+)
dhx32b LOC108269478,LOC108436743,LOC107592761 coding downstream 390576 19369052 ~ 19378774 (+)
G167913 LOC107572756,LOC107690120,LOC107579140 non-coding upstream 135406 18839609 ~ 18841610 (+)
G167909 NA non-coding upstream 139694 18837091 ~ 18837322 (+)
G167735 NA non-coding upstream 328454 18648355 ~ 18648562 (+)
G167730 NA non-coding upstream 333598 18642292 ~ 18643418 (+)
G167698 NA non-coding upstream 434509 18542308 ~ 18542507 (+)
G168175 NA non-coding downstream 544678 19523154 ~ 19524855 (+)
G168207 NA non-coding downstream 617947 19596423 ~ 19596967 (+)
G168504 inafm2 non-coding downstream 794414 19772890 ~ 19774666 (+)
G168585 NA non-coding downstream 909451 19887927 ~ 19888154 (+)
G168630 NA non-coding downstream 1009172 19987648 ~ 19987870 (+)
prlh2r LOC108269650,LOC108425589 other upstream 398708 18569379 ~ 18578308 (+)
ldah ldah other upstream 602936 18330467 ~ 18374080 (+)
kidins220a LOC108269813,LOC108425633 other upstream 1054265 17867416 ~ 17922751 (+)
itgb1bp1 itgb1bp1,LOC107707691,LOC107655317 other upstream 1270184 17700467 ~ 17706832 (+)
sox11a sox11b,LOC108269454 other upstream 1546265 17385507 ~ 17430751 (+)
G168191 NA other downstream 696437 19674913 ~ 19687591 (+)
LOC113538915 c9h15orf52 other downstream 744304 19722780 ~ 19766581 (+)
zfyve19 zfyve19 other downstream 901259 19879735 ~ 19886509 (+)
LOC113538658 NA other downstream 934867 19913343 ~ 19922486 (+)
G168650 cep170b other downstream 1064001 20042477 ~ 20042935 (+)

Expression


Co-expression Network