G168015 (arhgap5,LOC107733129,LOC107594795,LOC107719447)


Basic Information

Item Value
gene id G168015
gene name arhgap5,LOC107733129,LOC107594795,LOC107719447
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18961708 ~ 18966613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU198915
ACTGCTAAAGTAGCATCCCTATCACTGCTGACTGGGCTCTGTGTAATGCCTTCCTCATGATAGTTTCTCTGAATGGTGGCCGCATGTATTAGTCTGCATTAATTCTTACCATTTACACCAGCAACACTCAAGGTCAGGCTATAGATCCAaaaccatcaccacccactgaaGAAAATATTCAACCACTTGACATCATGCACTGATAACTGAAATAATCCTATTAGTTTCTACTTGAACAGTGAATTACAATGTGCAACCTTCAACAATAAATTGGCTCTACTACTGAACTACACGACAAACAATAAAGCAGGTGTTTTCCCCCCGAGGAATATTAAGCAAAACCGGTAAGACTGACCTGTACGTTCAATGTAGTCCACACACTTCTCAATAAACAGAGGAATAGGCCTGTCTGGGGTGACCAAGTTCTGTAGAGGAACACCAAAATAGTTGCTTTCCCAATTTCTTCGAGTTGGCGGATACAGTGGCTTTGGAACTTTTGCTTTAAcctTTCGGTTCCTTGTTTTttgctgctttctttttcttcaactTCTTGTCATCCTGCTCTGGGTCTGAAGTGATGGCTGGATTGTCTATCCCTCCTTTCCATGGATCCACAGGTGAAAGTAAAGGGTCCTCTTCACTTCCACGGTTACCCctgccttttttcttcttctgcacTGCCGGCCCTGATtcatcatcactgacatcaGAGTGCACTCGTCTATGATACGCTTTTGTCTTGCTGAAAAGGATCTTTGATCGATGTTTGTATTTAGATGGTCGCCTGCTACCCTGTGACTTCAATGTACGATCAAAACCATTCTCCTCATCACCATAAAAACCATGATGGCCACCAAATGAGTTGCGCATCTTGACTATCCTGCTATGGGTGTCCTCTGGAACAGTGTAAATGTCATCGTTGAAACCTTTTGATTTGGGGAGAGTGTCTGCTGGATCTGCATAATTGTCAGCCACCTCAAGGTCATCATGGACCATAACTGGACCTCGTGTTCTCCTGCTGGCCTTCATTCCAGCTTCAATGGTCTTCAAAAGGTTGGGGTCCAACTTCTTAACATTAGGCTTGTTTAGCACAGGTTTAGGTCTCACTGGGGGAGGCACTTTGTGGTTGCGTTCATGATCACCTACGGGTGTGCTATGGACAGGGTACTCGTTCCCTTCCAAGTCAATTTTATACTTTCTTTCACTAGGGGTGGGCAGCAGCTGTACATCATCCCCTATAGGGCTATAAGGTGGCGGTCCCTCAGCATCATCTTCAGAGTCAGGGTAATAAGAGTACGCTGGTGAATGGTTGTGTGGTGACTGAGGGAAGACATCTTCAGAGGTGCCATGGTCCCGTGTGCTATCAAACATGAAGGAGCTCTCTATACTGTTCTTTTTCTCAAGTACTTCATTGAAAAATGGTGTGAACACTTCCGTTTGCCTGTGGTACTGAGACAACGAGTAGAGTGCTGTAAATTTGGCTGTGATTTCTGTAGCAATGTGTTCCCCTTCAGTCATCAGCTCCTTGATTGCCTCATTCTCAAAGAAATCAGCCTGGCTGTCCGTTATAGCCACCATTTGGACCGGAATGACATCTTGGACCTCTGCCAAGAATGCCCGCAACATAGCCATGGAAGCCTTTCGTTTTGCTGAGTAGACAAGTATATATCCATGCACCAATTCATCCTTTCTGATTCCAATTGAGGAGTGGTAAGAGAGGACAGTGACTTGTATGCGCCTACGACTGTCACCAATGATTTTGTCGAGGTACAGGGTGTTGCTCTGACCAGGCTGACCAGCACTACAGGAATGTGAATCCAGAAAAGGTGAGAGAATAAGATCCACGCTGAATGGATCTCCGCACATGGCACACATAACTATTCGCAAATCTGTTTCAGACAAATCTTTGATGGAGGGCACGGGACTCATCAAGTCAAAATTGTGCTTTAGGCCTTCTAGGACTGCTCTGAGCGCTTGTTTTATTTGAGACTCGTTAAACTTTCGGGGAAAGGTCCCAGAGGGCATGTCTATGAATGTGCACTGTAGCTTATTAGCAAGCTGTTGGCCCTGATGCCTTAAAATAGGCATGTTTTTGCAAACACTGTCTCGCTGACCTGCTAAGATTAGAATAAATGGCGATGGATGGGCAAATCTGTCTCTTCTGCCCTGAGAAATCTCAGCTCGGATTCGGCTTATGCGATCGCCAATGTAATTAAGTGACTCTATTGAACTGAAGACACAGAAGAACCCATGAGGTTTGAAATTTGATAGCCAGGAATGGTTCAAAAGCATGGGAGAATTTACATCAACAGATAAAAGTTCCAATTCATAGATCTTACCATCAAGGGTATATTCATCATCTGTGGACTGAGCTTTTATTTCATTAGCAAGTTCTTGAGCTAGTCCTTCACGGCCAAGAAGACACAAGTTCACTTTATCAAGATTGGAACTGTTGTAGTACAGATTAGTGCGACCGTGGTCCAACTGAACCAGCCTATTTGCAAGCACCTGCTCAACTTTCAGATCCACACAGCTCACACCACTCAGACACGTCTCTTTGGTGGGATGATAAACAAATCCGATGTGTTTCAGTAAAAGGGACTCCCTATCTGGGGCAAGTTTCTGTAGAGCTCTGTATCTGGGCTCCTCGTTGAGTACAGTGTGGATTTCGCTCATCTTATCACAACTTGGGGTGGCATTCAAATCCAAGTCATAAAACAGCTCGGCATGCTCAAATAGCATTTCCTGAAACTCCTCTTTGGCCCCTTCAACTATTTCCTGCTGATGCAGCGCATACACGTCTCTGCGATCAGCTTCTGTGATATACTTGTATGCCTCGTCCTCCATGACGAAACATATAATCTCTTCCCACGGTTGGCCAGGACTTATGAAATGCACTCGCTCCAGTGTCTTCTTGAATTTTTCCTTCATTTCGAGTCGCCTCTTTTCAGATATCAAATGCTGGACATGGTTTTGGAAAATCCTCTCACCTTCTGCCGTTTTAAGGATGTCAAAGGGGACTCTTCTGTCATCTGTTTTGTTAACATGGTCTGTCTCATCCCATGGGGTTTGCTCCAGCACAACAAAGTAGTACTGAAATTCATTCTTGCTTTTTAACAGGTTCTGAGCATCTGTCCAGCTCAGGTTCTCAATCTCTTCCAAGTTGTTAAGCATTTTGTTAAGAACTTTTGGCAAACTGGAGAGATAAtcgtctcttctcttcttgATATGCTCTTGTCTCAGCTGTTCAATATGCTTCGAAAAGGTGTTTCTAGCTTTCCGAGTACCTTCCAAATTAATGTATTCCTCGTAGTCTGGATGGTTTTTCAATGAGTTGCTCACAACTTTCCAGCTCGTGTGATAATCTCGGACAGACTGAACAATAAGCTTTTCAAACTTGACCGTGACTGTGGCTACTAATTGTCTCTGAGCTTTGTAAGCCTCCAAGTATGGGATAATTTTGGGTTTACCTCGTGTTTTGTCCATTTGCTGGGTTAGCGCATTAAAACAGAGGTCCACGTTGACAGATGACAGAGCCGATGTCTCAACCACCAGAAGATTCTTTTTGCTTGCAGCAAAAGTCTGGACATCCCGTAAGTATTGCTCTACACACGAATCACATTTCGTTGCAGCAATGATAATGGGTTTTTTTGACTTGGCAATTTGTGAGTACAGGCTATTGACAAATTTCATCTGGTCATCAAATTTTCTGTTGCATCCTTTGCTTACATCTATGCACAAGACAAAACCGTCGATATTAAGCTTTCCATCAGGCATCTGCTTCTGATCAAAATCCTGCTCCAAGCCAAGCTGATCTGTGCAAATATACATCAGTTTTTCAGCAGACTGCAGCTTTGTAGTCGCAGCCCGCTTAGAGTAGGGTTGCAAATTTGTGCTCCGATGAGGCAAAAAGGTCTGGTCGTCAATAAATTCAGTCTGTTCGATGACTTGAATTCGACAGTCAAGGCCATCGTCTCCTCTGTGTAACACTTCCCCCCAGTACAGGAAGTGATCATTGTTCACCACACGACCTCCAAAGTCGATTGTGCTCAACACAGAAGTGTGCTCTGAGTAGTAGCTGTCCGCGCTGGGACGCACGTATCTGTTGCATAGGCAGGACTTGCCCACACCACAGttgcctttttctttctcagtgcCTGAGAGCCCAACTACACTGATAGTGTACGTCGGTGGACGGGGCTCTTTGTTCTTGGCCATTATACAGCCCCTCTCATTGCCTTGTTACTCTCAGCAAAGTCTGCCAGCAAGGCAAGGATAAAGTTCCATTGGCTACTGGTGATGCATTTTCATTTCTCGCTCTGAACAGATGTGGATATTCCTTTCCTCTGGATCGTTGGTTATGGAGCAGCTGTGCTTCTC

Function

symbol description
arhgap5 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP5 (Rho GTPase activating protein 5).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198915 True 4380 TUCP 0.45 2 18961708 18966613

Neighbor

gene id symbol gene type direction distance location
LOC113538543 dtd2,LOC107197769,LOC107561538,LOC107674124,LOC107733196,LOC107594854 coding downstream 27913 18931562 ~ 18933795 (-)
LOC113538579 LOC108270446 coding downstream 30351 18918532 ~ 18931357 (-)
pomt2 pomt2,LOC107594797 coding downstream 44481 18902222 ~ 18917227 (-)
lin52 lin52,LOC107594798 coding downstream 60836 18888165 ~ 18900872 (-)
vsx2 vsx2,LOC107697755 coding downstream 80383 18872352 ~ 18881325 (-)
abraxas2 fam175b coding upstream 34519 19001132 ~ 19012954 (-)
fank1 fank1,LOC108436747 coding upstream 387250 19353863 ~ 19364239 (-)
klf11b LOC108270275 coding upstream 422358 19388971 ~ 19392182 (-)
grhl1 grhl1,LOC108269933 coding upstream 441104 19407717 ~ 19421925 (-)
LOC113538555 LOC108269630,LOC108441822 coding upstream 532135 19498748 ~ 19524868 (-)
G167883 NA non-coding downstream 159015 18802441 ~ 18802693 (-)
G167802 NA non-coding downstream 364822 18596581 ~ 18596886 (-)
G167786 NA non-coding downstream 389815 18571503 ~ 18571893 (-)
G167783 NA non-coding downstream 397329 18563971 ~ 18564379 (-)
G167684 NA non-coding downstream 502914 18458455 ~ 18458794 (-)
LOC113538783 NA non-coding upstream 313665 19280278 ~ 19285841 (-)
G168304 NA non-coding upstream 353225 19319838 ~ 19426679 (-)
LOC113538592 NA non-coding upstream 474476 19441089 ~ 19449728 (-)
G168354 NA non-coding upstream 527450 19494063 ~ 19498688 (-)
G168399 NA non-coding upstream 619729 19586342 ~ 19586548 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 114012 18839615 ~ 18847696 (-)
bahd1 bahd1,LOC108436768 other downstream 318819 18600295 ~ 18642889 (-)
gdf7 LOC108270114 other downstream 579253 18375403 ~ 18382455 (-)
G167566 apob other downstream 645501 18305743 ~ 18316207 (-)
cmpk2 cmpk2 other downstream 1337174 17615738 ~ 17624534 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 620311 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 622755 19589368 ~ 19595214 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other upstream 633517 19600130 ~ 19609778 (-)
srp14 srp14,LOC106610862 other upstream 1046966 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 1331898 20298511 ~ 20301554 (-)

Expression


Co-expression Network