G168191


Basic Information

Item Value
gene id G168191
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19674913 ~ 19687591 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU199111
GAAGaataataagagaaaaacacaaacaaaaacaatagtgtTCCAGCACCATCAGTGCTTGACCCCTAATAAACCAAGACTGAGATTGAGAACCATATTCATCCTTACTTTTCTTTGTTCTACTGAACCTGTAACCAGTGATAAGTTTTATAATGGAAATGTAAACTTCTGAGCCATTCTTGCTCCTAAAACCTATAAAAATGTTTCAGGTGCATGAGTTATGTGCGTTTAATGGTTTAATCTACACCTTGCACAAGTTGCATAATCAAGTGAACAAGTGTTATTTACAAAGGAGATCATTCTTAAACCAAGTGGGTCTTATTTCCAGAATTCAAGATTTGACATTGTTTCAGCATTTCCACCTTCTTTAAAGTTGCACACCATGCCAcagctgcttcttttttttttttttttttggaacatctGGAGACTGAAGTTTCATCTGTGTGAATTTCAGAGCCCAAGGAGTCAATGATTCTAAAAGTCATTCTTTAAaaccaacctttttttttattatcacttaattgaaaacaaatatatgtaGCTTACttatacatgttttatttcaatggtgatgtttacacaagaaaaaaacagcatcagaCAGACTTCAGAGGTCTCCTTGTCATTATGGCTTGCCTTTGCCCTCCTTTCCTTGTCCTTGACCATGACCATGACCGTGACCATGACCATGACCCTGACCCTTGCCATGACCTTGGCCTTGACCTTGGCCTTGACCTGGCCCATGGCCATGTCCGTGCTCTTGGCCTTTTCCTTTGCCCTTGCTCTCACCTTGGCATTCTTTGCTCTTATTGCACTGCAGCAGAAATATACATGAGCTTCATATTTCTCAAAGCATATGATGCTATTGTTGCATATGGATATCATATGTATACATGCA
>TU199113
TTCTTTAAAaccaaccttttttttattatcacttaattgaaaacaaatatatgtaGCTTacttatacatattttatttcaatggtgatgtttacacaagaaaaacAGCATCAGACAGACTTCAGAGGTCTCCTTGTCATTATGGCTTGCCTTTGCCCTCCTTTCCTTGTCCTTGACCATGACCATGACCGTGACCATGACCATGACCCTGACCCTTGCCATGACCTTGGCCTTGACCTTGGCCTTGACCTGGCCCATGGCCATGTCCGTGCTCTTGGCCTTTTCCTTTGCCCTTGCTCTCACCTTGGCATTCTTTGCTCTTATTGCACTGCAGCAGAAATATACATGAGCTTCATATTTCTCAAAGCATATGATGCTATTGTTGCATATGGATATCATATGTATACATGCA
>TU199117
TGGTTTAATCTACACCTTGCACAAGTTGCATAATCAAGTGAACAAGTGTTATTTACAAAGGAGATCATTCTTAAACCAAGTGGGTCTTATTTCCAGAATTCAAGATTTGACATTGTTTCAGCATTTCCACCTTCTTTAAAGTTGCACACCATGCCAcagctgcttctttttttttttttttttttttTTCTTTAAAaccaaccttttttttattatcacttaattgaaaacaaatatatgtaGCTTACttatacatgttttatttcattggtgatgtttacacaagaaaaaaCAGCATCAGACAGACTTCAGAGGTCTCCTTGTCATTATGGCTTGCCTTTGCCCTCCTTTCCTTGTCCTTGACCATGACCATGACCGTGACCATGACCATGACCCTGACCCTTGCCATGACCTTGGCCTTGACCTTGGCCTTGACCTGGCCCATGGCCATGTCCGTGCTCTTGGCCTTTTCCTTTGCCCTTGCTCTCACCTTGGCATTCTTTGCTCTTATTGCACTGCAGCAGAAATATACATGAGCTTCATATTTCTCAAAGCATATGATGCTATTGTTGCATATGGATATCATATGTATACATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199111 True 901 TUCP 0.38 2 19674913 19687591
TU199113 False 411 TUCP 0.41 2 19679315 19687591
TU199117 False 599 lncRNA 0.39 2 19682976 19687591

Neighbor

gene id symbol gene type direction distance location
mthfd1b mthfd1,LOC108269612,LOC108232073 coding upstream 5366 19646283 ~ 19669547 (+)
LOC113538896 LOC108269628 coding upstream 44793 19620847 ~ 19630120 (+)
LOC113538831 LOC108269613,LOC108441832 coding upstream 182550 19477213 ~ 19492363 (+)
gcfc2 LOC108270421 coding upstream 200227 19460183 ~ 19474686 (+)
ywhaqb LOC108269934 coding upstream 217354 19449741 ~ 19457559 (+)
plcb2 plcb2 coding downstream 90977 19778568 ~ 19809259 (+)
LOC113538872 ankrd63 coding downstream 149667 19837258 ~ 19839847 (+)
spint1a NA coding downstream 235542 19923133 ~ 19937793 (+)
LOC113538714 plekhg3,LOC108269610,LOC107560184,LOC107726575,LOC107660984,LOC108430640,LOC107678711 coding downstream 254320 19941911 ~ 19984241 (+)
xgb LOC108269631,LOC108430641 coding downstream 300893 19988484 ~ 20014894 (+)
G168207 NA non-coding upstream 77946 19596423 ~ 19596967 (+)
G168175 NA non-coding upstream 150058 19523154 ~ 19524855 (+)
G168011 NA non-coding upstream 696437 18977016 ~ 18978476 (+)
G167913 LOC107572756,LOC107690120,LOC107579140 non-coding upstream 833303 18839609 ~ 18841610 (+)
G167909 NA non-coding upstream 837591 18837091 ~ 18837322 (+)
G168504 inafm2 non-coding downstream 85299 19772890 ~ 19774666 (+)
G168585 NA non-coding downstream 200336 19887927 ~ 19888154 (+)
G168630 NA non-coding downstream 300057 19987648 ~ 19987870 (+)
G168632 NA non-coding downstream 331170 20018761 ~ 20019038 (+)
G168633 NA non-coding downstream 331566 20019157 ~ 20020371 (+)
prlh2r LOC108269650,LOC108425589 other upstream 1096605 18569379 ~ 18578308 (+)
ldah ldah other upstream 1300833 18330467 ~ 18374080 (+)
kidins220a LOC108269813,LOC108425633 other upstream 1752162 17867416 ~ 17922751 (+)
itgb1bp1 itgb1bp1,LOC107707691,LOC107655317 other upstream 1968081 17700467 ~ 17706832 (+)
sox11a sox11b,LOC108269454 other upstream 2244162 17385507 ~ 17430751 (+)
LOC113538915 c9h15orf52 other downstream 35189 19722780 ~ 19766581 (+)
zfyve19 zfyve19 other downstream 192144 19879735 ~ 19886509 (+)
LOC113538658 NA other downstream 225752 19913343 ~ 19922486 (+)
G168650 cep170b other downstream 354886 20042477 ~ 20042935 (+)
zbtb42 zbtb42,LOC106610857,LOC106582697 other downstream 455123 20142714 ~ 20148628 (+)

Expression


Co-expression Network