G168207


Basic Information

Item Value
gene id G168207
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19596423 ~ 19596967 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU199143
ccttcttccattgctccatggtccagttctgatgctcacatgcccattgtaggcgctttcagtggtggacaggggtcagcatgggcactctgaccggtctgcagctatgcagcctcatacacagcaagctgcgatgcactgtgtgttctgacacctttctatcatagccagcatgaactttttcagcaatttgtgctacggTAGCTCTTctgatcagaccagatgggttAGGCTTCACTCCTCatacgcatcagtgagccttgggcaccaatGACCCTGTCACTGTTTCACGGGTTGCcgttctttggaccacttttggtagatactaaacactgcataccaggaataCCTCATAAGACccgccgttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaattcactcagatccttacgcttgcccatttttcctgcttccaacagaTCAACTtggagaactgactgttcacttgctgcctaatatgtcccaccccttgacaggtgccttTGTAACAAGATagtca

Function

NR:

description
PREDICTED: uncharacterized protein LOC107753594

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199143 True 545 lncRNA 0.49 1 19596423 19596967

Neighbor

gene id symbol gene type direction distance location
LOC113538831 LOC108269613,LOC108441832 coding upstream 104060 19477213 ~ 19492363 (+)
gcfc2 LOC108270421 coding upstream 121737 19460183 ~ 19474686 (+)
ywhaqb LOC108269934 coding upstream 138864 19449741 ~ 19457559 (+)
dhx32b LOC108269478,LOC108436743,LOC107592761 coding upstream 217649 19369052 ~ 19378774 (+)
adam12 LOC108270250,LOC108436745 coding upstream 244110 19227546 ~ 19352313 (+)
LOC113538896 LOC108269628 coding downstream 23880 19620847 ~ 19630120 (+)
mthfd1b mthfd1,LOC108269612,LOC108232073 coding downstream 49316 19646283 ~ 19669547 (+)
plcb2 plcb2 coding downstream 181601 19778568 ~ 19809259 (+)
LOC113538872 ankrd63 coding downstream 240291 19837258 ~ 19839847 (+)
spint1a NA coding downstream 326166 19923133 ~ 19937793 (+)
G168175 NA non-coding upstream 71568 19523154 ~ 19524855 (+)
G168011 NA non-coding upstream 617947 18977016 ~ 18978476 (+)
G167913 LOC107572756,LOC107690120,LOC107579140 non-coding upstream 754813 18839609 ~ 18841610 (+)
G167909 NA non-coding upstream 759101 18837091 ~ 18837322 (+)
G167735 NA non-coding upstream 947861 18648355 ~ 18648562 (+)
G168504 inafm2 non-coding downstream 175923 19772890 ~ 19774666 (+)
G168585 NA non-coding downstream 290960 19887927 ~ 19888154 (+)
G168630 NA non-coding downstream 390681 19987648 ~ 19987870 (+)
G168632 NA non-coding downstream 421794 20018761 ~ 20019038 (+)
G168633 NA non-coding downstream 422190 20019157 ~ 20020371 (+)
prlh2r LOC108269650,LOC108425589 other upstream 1018115 18569379 ~ 18578308 (+)
ldah ldah other upstream 1222343 18330467 ~ 18374080 (+)
kidins220a LOC108269813,LOC108425633 other upstream 1673672 17867416 ~ 17922751 (+)
itgb1bp1 itgb1bp1,LOC107707691,LOC107655317 other upstream 1889591 17700467 ~ 17706832 (+)
sox11a sox11b,LOC108269454 other upstream 2165672 17385507 ~ 17430751 (+)
G168191 NA other downstream 77946 19674913 ~ 19687591 (+)
LOC113538915 c9h15orf52 other downstream 125813 19722780 ~ 19766581 (+)
zfyve19 zfyve19 other downstream 282768 19879735 ~ 19886509 (+)
LOC113538658 NA other downstream 316376 19913343 ~ 19922486 (+)
G168650 cep170b other downstream 445510 20042477 ~ 20042935 (+)

Expression


Co-expression Network