gpx2 (gpx2,LOC102306767,LOC100700650)


Basic Information

Item Value
gene id gpx2
gene name gpx2,LOC102306767,LOC100700650
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19586924 ~ 19588902 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU199353
GCCTACCTCAGTCTTTTCACCACATCGATGCATTATGTATCACTTGCATATCAACTTCCCTCCAAGTCATTTGACACCCAAGCTTTATAGCTGAAGCCAGGCAACCAGGATGACTTGCATGCCAGTTAGGAAGCAGACGCACATCAGGAGGACACCAAACACGGACCATGACCTTCATAGCCAAGACGTTTTATGACCTGCGTGCTACCACGTTGGAAGGGGAATCTATCGATTTTAATGTCTACCGAGGCCGAGTGGTACTTATTGAGAATGTGGCATCGCTATGAGGGACCACCACCCGGGACTACAGCCAGCTCAACCAGCTCCAGAGCAGGTACCCGCACCGGCTGGTGGTCCTGGCCTTCCCCTGTAATCAGTTTGGCTACCAGGAAAACTGCAGAAATGGAGAGATCCTGAACTCTTTGAAGCACGTACGACCAGGTGGAGGGTTTGAGCCTTCGTTCACCGTTTTTGAGAAGTGCGATGTGAATGGGGCTAACACACATCCCGTCTTCGCATACCTGAAAGACAAACTTCCGTACCCCGATGATGACCCAGTCTCTCTTATTCAGGACCCCAAGTTCTTAGTGTGGAGTCCCATCAGCAGAACTGATGTCTCTTGGAATTTTGAGAAGTTCCTGATTGGCCCAGAGGGAGAACCCTTCAAGAGATACAGCAAAAACTTTGAGACCATTAACATAGAACCTGACATTCAAAGGTTATTGAGGCTGACCAAAAACTAATCAAAACAAGTGCCtcataatgtatttaattttactgtagGTACCACTGTGC
>XM_026934177.2
ACTAGAACAACTGCTACCATCTGTTTAGAGTGTGCCATTAATTGCTTGTTGAGTTGTAGTTAATTCCCTGTATATTTTATACCATCTTTCCCTCTTGTTTGTGGAAAATATCTTCCAGACCAGAATTGTTTTTTGTAACATATTCCATAGACCAGACTGTCTGAATGTGTATAAAAACTGGTGCAGGTTTATAGATTACCTGCACCTGAGATGGCCTACCTCAGTCTTTTCACCACATCGATGCATTATGTATCACTTGCATATCAACTTCCCTCCAAGTCATTTGACACCCAAGCTTTATAGCTGAAGCCAGGCAACCAGGATGACTTGCATGCCAGTTAGGAAGCAGACGCACATCAGGAGGACACCAAACACGGACCATGACCTTCATAGCCAAGACGTTTTATGACCTGCGTGCTACCACGTTGGAAGGGGAATCTATCGATTTTAATGTCTACCGAGGCCGAGTGGTACTTATTGAGAATGTGGCATCGCTATGAGGGACCACCACCCGGGACTACAGCCAGCTCAACCAGCTCCAGAGCAGGTACCCGCACCGGCTGGTGGTCCTGGCCTTCCCCTGTAATCAGTTTGGCTACCAGGAAAACTGCAGAAATGGAGAGATCCTGAACTCTTTGAAGCACGTACGACCAGGTGGAGGGTTTGAGCCTTCGTTCACCGTTTTTGAGAAGTGCGATGTGAATGGGGCTAACACACATCCCGTCTTCGCATACCTGAAAGACAAACTTCCGTACCCCGATGATGACCCAGTCTCTCTTATTCAGGACCCCAAGTTCTTAGTGTGGAGTCCCATCAGCAGAACTGATGTCTCTTGGAATTTTGAGAAGTTCCTGATTGGCCCAGAGGGAGAACCCTTCAAGAGATACAGCAAAAACTTTGAGACCATTAACATAGAACCTGACATTCAAAGGTTATTGAGGCTGACCAAAAACTAATCAAAACAAGTGCCtcataatgtatttaattttactgtagGTACCACTGTGCACTCCTCTACCTTTTCTTATTTTACTTAATGAAGTTGATGCTCTAAACTAACGTAGGGAGTATTAACTGAGGtggtgtaaatataaaaaagacgTGTAGAGGATGCTAACAGAGATGTACTGAAAGGAatcctttaataa

Function

symbol description
gpx2 Is expressed in otic sensory epithelium. Orthologous to human GPX2 (glutathione peroxidase 2).

NR:

description
glutathione peroxidase 2

GO: NA

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

RNA

RNA id representative length rna type GC content exon number start site end site
TU199353 False 795 lncRNA 0.48 2 19587064 19588689
XM_026934177.2 True 1148 mRNA 0.44 2 19586924 19588902

Neighbor

gene id symbol gene type direction distance location
LOC113538672 LOC108269607 coding downstream 3674 19528667 ~ 19583250 (-)
LOC113538555 LOC108269630,LOC108441822 coding downstream 62056 19498748 ~ 19524868 (-)
grhl1 grhl1,LOC108269933 coding downstream 164999 19407717 ~ 19421925 (-)
klf11b LOC108270275 coding downstream 194742 19388971 ~ 19392182 (-)
fank1 fank1,LOC108436747 coding downstream 222685 19353863 ~ 19364239 (-)
LOC113538986 LOC108269623,LOC108430634 coding upstream 40332 19629234 ~ 19643615 (-)
LOC113538599 inafm2 coding upstream 183898 19772800 ~ 19775087 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding upstream 251469 19840371 ~ 19867165 (-)
bub1bb bub1b coding upstream 284520 19873422 ~ 19879335 (-)
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding upstream 302692 19891594 ~ 19908747 (-)
G168399 NA non-coding downstream 376 19586342 ~ 19586548 (-)
G168354 NA non-coding downstream 88236 19494063 ~ 19498688 (-)
LOC113538592 NA non-coding downstream 137196 19441089 ~ 19449728 (-)
G168304 NA non-coding downstream 160245 19319838 ~ 19426679 (-)
LOC113538783 NA non-coding downstream 301083 19280278 ~ 19285841 (-)
G168405 NA non-coding upstream 9466 19598368 ~ 19598898 (-)
LOC117598328 NA non-coding upstream 90595 19679497 ~ 19680669 (-)
LOC117598314 NA non-coding upstream 94337 19683239 ~ 19684146 (-)
LOC113538910 NA non-coding upstream 98329 19687231 ~ 19688109 (-)
G168466 NA non-coding upstream 174944 19763846 ~ 19765727 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 620311 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 739228 18839615 ~ 18847696 (-)
bahd1 bahd1,LOC108436768 other downstream 944035 18600295 ~ 18642889 (-)
gdf7 LOC108270114 other downstream 1204469 18375403 ~ 18382455 (-)
G167566 apob other downstream 1270717 18305743 ~ 18316207 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 466 19589368 ~ 19595214 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other upstream 11228 19600130 ~ 19609778 (-)
srp14 srp14,LOC106610862 other upstream 424677 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 709609 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 733862 20322764 ~ 20330746 (-)

Expression


Co-expression Network