LOC117598328


Basic Information

Item Value
gene id LOC117598328
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19679497 ~ 19680669 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU199395
gtttgtgatgttctgaatgccctgccacatgcgccgtgtgtctctgctggtcttgaagtggttgtggattctctgagcgtgtgcGCGCTTTGcttctctgatggcccgggacagatTGGCCCTCGCTGTTTTTAGGGCcaccttgtcgcctgctctgaaagcagagtcccgggtcctcagtagcgcacgcacctctgcagtcatccacggcttctggttggagcgtgagGGTGTCGCTACATCATAAATTCAGACAGAGCAGAGAGTTTCTTCAGAGGTGGACTTGTCAAGCCAACAGTTTCAGTGCAGTTATTCCTGAGAACAATGGGAAATACAGATCAAACCTCTCAGAGCAAAGAATGCCCAGGTGAGGGCAAGGACAAAGGAAGAGGCCAAGAGCACGGACCTCGCCATGAGCCAGGTCAAGGCCAACATCACGGCAAGTGTAATGACAAGAGTCAAG
>XR_004578996.1
CCTGTCCATCTTCTCCAGGGTGTCGCTACATCATAAATTCAGACAGAGCAGAGAGTTTCTTCAGAGGTGGACTTGTCAAGCCAACAGTTTCAGTGCAGTTATTCCTGAGAACAATGGGAAATACAGATCAAACCTCTCAGAGCAAAGAATGCCCAGGTGAGGGCAAGGACAAAGGAAGAGGCCAAGAGCACGGACCTCGCCATGAGCCAGGTCAAGGCCAACATCACGGCAAGTGTAATGACAAGAGTCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199395 True 463 lncRNA 0.53 5 19679497 19680669
XR_004578996.1 False 252 lncRNA 0.49 4 19679497 19680212

Neighbor

gene id symbol gene type direction distance location
LOC113538986 LOC108269623,LOC108430634 coding downstream 35882 19629234 ~ 19643615 (-)
LOC113538672 LOC108269607 coding downstream 96247 19528667 ~ 19583250 (-)
LOC113538555 LOC108269630,LOC108441822 coding downstream 154629 19498748 ~ 19524868 (-)
grhl1 grhl1,LOC108269933 coding downstream 257572 19407717 ~ 19421925 (-)
klf11b LOC108270275 coding downstream 287315 19388971 ~ 19392182 (-)
LOC113538599 inafm2 coding upstream 92131 19772800 ~ 19775087 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding upstream 159702 19840371 ~ 19867165 (-)
bub1bb bub1b coding upstream 192753 19873422 ~ 19879335 (-)
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding upstream 210925 19891594 ~ 19908747 (-)
LOC113538610 pld4 coding upstream 338550 20019219 ~ 20025636 (-)
G168405 NA non-coding downstream 80599 19598368 ~ 19598898 (-)
G168399 NA non-coding downstream 92949 19586342 ~ 19586548 (-)
G168354 NA non-coding downstream 180809 19494063 ~ 19498688 (-)
LOC113538592 NA non-coding downstream 229769 19441089 ~ 19449728 (-)
G168304 NA non-coding downstream 252818 19319838 ~ 19426679 (-)
LOC117598314 NA non-coding upstream 2570 19683239 ~ 19684146 (-)
LOC113538910 NA non-coding upstream 6562 19687231 ~ 19688109 (-)
G168466 NA non-coding upstream 83177 19763846 ~ 19765727 (-)
G168493 NA non-coding upstream 86085 19766754 ~ 19766953 (-)
G168608 NA non-coding upstream 206646 19887315 ~ 19887830 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 69719 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 84283 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 90595 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 712884 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 831801 18839615 ~ 18847696 (-)
srp14 srp14,LOC106610862 other upstream 332910 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 617842 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 642095 20322764 ~ 20330746 (-)
G169119 NA other upstream 884260 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 1133020 20813689 ~ 20817439 (-)

Expression


Co-expression Network