G168504 (inafm2)


Basic Information

Item Value
gene id G168504
gene name inafm2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19772890 ~ 19774666 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU199473
AGCCGAAAGTTTGATCAAGGCCTGAGCGTGTGCACTATATACATTTACCAAATAGCCTACATGTGACctatgtacatttatatatatgtatgtaccaaatacacaatacatttacattaatatttgcaCATACCTGAGCGGAACTCGACACAGGTTCCTCTGATTTAGGAATCCTGGTTAATTGGGAGGCTATATGGACACTGTTCCAGTGAAATgcaatgtaaaatattttcctcttacaatattttaatagctggtCCAAAAAAAAGTATCAGTATTCTAAAGAAATGGGGATGCTGTTAATTATTTTCGTGCTGCAGTTCAAATAAATGCGTCTGGCAGGCTAAACCATTTGGAAACTATGCAAGCACAGAAAGGTGAGTTGGGAAGCTGGATGTTATGCCAATCAGTCTTGAATTTAGTGTCCATCAAACAGGTGCCATGTGCCCTAAAATGAAAGATTACACTTTGGACGGTTTATGTTACACGgaaaggttttaaaaatataaccaAGTCTTTGCTGTGTGTTAGCATAATCAAGTTGGCGTCCATGCACCAAGCGCAGAATACTTCCCATCTTTCCATGAATCCTTCAGCTGTCAGCTGCAGCCGCGCGCGCGCGCCGCTATGCACCAAACTGAGTTAGGCTACGTCCTAAACCGCACATTACCGCACTAAATAGTATGCTGAAACTGCACTGCTTTTTGCACACCACTTATACGGAAGCGTGCGGTTTGTAAGTGTAAGCTTTAACCAGTTTAGGTCATTCTTGCCCTCTGTTTTCCGGTTCATTGGGCTCGGTTCGAGAGCGCGCAGAATTCTCCGGTAGCGTCTCGCGCTTTTCGCGTTTTGCGTCACTTGGACTCGTACCGCTGCCCGAGTTTTGACCATATCCGTACAGTCCAAACGCGTTTGGTTTCATCTGATCGCTGGCAGGCGTGTATGCAATGGCGGCTGAGTAGGAGCGCGCTGTTCCCGCAATCTCTGCGGCCGCGCTCTCGTTTCCGGCGCCGGTCGCATTAAAGCCCAGGTCTATTTGCGTACCATTTGCGCTCGTGCCGTTGTCCGCTTGCGTGAAATTGGCGCTCGTGCTGTTAACGCTGGTCGAGACGTTCATGAATGCGTTGTTGTTTCCCGTGGACCCGTCTAACATTCCGGATCCATGGCTTGTTGGTTTCCATATTAGGCTGTAATAAATGGCCAGGATGATCGCCGCCAGGGACACGGAGAGCACGTAGGCGAACACGGTGGCCAGCCGGACCCACTTTTTGTTAGTCTTCGCGGCCATCTTGGCTTTCTTGTCCCCCGTGTACGTGGCCGGCTTGCCCCGCTCCATGTTGGGCATGAAGTCCCTCTCCCGCATGTTGGCCCGGTTTTTGCCTCGGTGCTCCACCACTCCGTCCGTCTTGAAGGCTGTGTGGAGGGTCTGGGACGCGAAGAAAGAGGGGGACGTTTTAAATCCAAACGTAAGAAAGACGCACCGGAGAGGCGCACCGGACGCTTTGGGGCCTGCTCGATGCTTTGTAGCTTAGAGCAATTTATTTTCGTCCATGTCCGCTCCTCGAAGCCTTCTCAGAAATCCATGACAGCACACCTCATCTTCTCCTCACAGGCTCCAgcgggttttgttttttttcctggagcATCCAGCCGCCCGTTTCCCGCAGGCGCGAATATCCAGGGAGAGATCAAGCGCGCGAACGCATCATTGAACAGAAGTGCAGATTTAAGCGTAATCATGTATGGCACACGCACCACTGCTCGTCCTGTTCAGCAT

Function

symbol description
inafm2 Predicted to be integral component of membrane.

NR:

description
PREDICTED: moesin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199473 True 1777 lncRNA 0.49 1 19772890 19774666

Neighbor

gene id symbol gene type direction distance location
mthfd1b mthfd1,LOC108269612,LOC108232073 coding upstream 103343 19646283 ~ 19669547 (+)
LOC113538896 LOC108269628 coding upstream 142770 19620847 ~ 19630120 (+)
LOC113538831 LOC108269613,LOC108441832 coding upstream 280527 19477213 ~ 19492363 (+)
gcfc2 LOC108270421 coding upstream 298204 19460183 ~ 19474686 (+)
ywhaqb LOC108269934 coding upstream 315331 19449741 ~ 19457559 (+)
plcb2 plcb2 coding downstream 3902 19778568 ~ 19809259 (+)
LOC113538872 ankrd63 coding downstream 62592 19837258 ~ 19839847 (+)
spint1a NA coding downstream 148467 19923133 ~ 19937793 (+)
LOC113538714 plekhg3,LOC108269610,LOC107560184,LOC107726575,LOC107660984,LOC108430640,LOC107678711 coding downstream 167245 19941911 ~ 19984241 (+)
xgb LOC108269631,LOC108430641 coding downstream 213818 19988484 ~ 20014894 (+)
G168207 NA non-coding upstream 175923 19596423 ~ 19596967 (+)
G168175 NA non-coding upstream 248035 19523154 ~ 19524855 (+)
G168011 NA non-coding upstream 794414 18977016 ~ 18978476 (+)
G167913 LOC107572756,LOC107690120,LOC107579140 non-coding upstream 931280 18839609 ~ 18841610 (+)
G167909 NA non-coding upstream 935568 18837091 ~ 18837322 (+)
G168585 NA non-coding downstream 113261 19887927 ~ 19888154 (+)
G168630 NA non-coding downstream 212982 19987648 ~ 19987870 (+)
G168632 NA non-coding downstream 244095 20018761 ~ 20019038 (+)
G168633 NA non-coding downstream 244491 20019157 ~ 20020371 (+)
G168634 NA non-coding downstream 245968 20020634 ~ 20021068 (+)
LOC113538915 c9h15orf52 other upstream 6309 19722780 ~ 19766581 (+)
G168191 NA other upstream 85299 19674913 ~ 19687591 (+)
prlh2r LOC108269650,LOC108425589 other upstream 1194582 18569379 ~ 18578308 (+)
ldah ldah other upstream 1398810 18330467 ~ 18374080 (+)
kidins220a LOC108269813,LOC108425633 other upstream 1850139 17867416 ~ 17922751 (+)
zfyve19 zfyve19 other downstream 105069 19879735 ~ 19886509 (+)
LOC113538658 NA other downstream 138677 19913343 ~ 19922486 (+)
G168650 cep170b other downstream 267811 20042477 ~ 20042935 (+)
zbtb42 zbtb42,LOC106610857,LOC106582697 other downstream 368048 20142714 ~ 20148628 (+)
fsip1 fsip1 other downstream 590508 20365174 ~ 20453805 (+)

Expression


Co-expression Network