G168633


Basic Information

Item Value
gene id G168633
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20019157 ~ 20020371 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU199622
gtgagaaagagagtgaatgagtgagtgagaaagagagtgaatgagtgagaaagagagtgagtgaatgagtgagtgagagagtgtgatagagagagagaaagagagagagaacgaacTTTGTGCTAAGTGTTCCCGGGTGCCGGATCCACAAAGTGCTTAcaggagatgaatgaatgaaacagtaATATTCTGGCTAATTATTGGAGGCACTgagttttttttggttttgttttgttttttaatagatGATCTTTTTACAGACAGAGCATATTAAGTCCAAGACGACAAGTGACTAGTCAAATAGATGAATATaagaactgaataataaatactacagcagctttgataatggtggggtTTGATTTCTAccactatatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcacagtccCCCTGACTCTGCTTCacggaccccactttgagaaccactggttttaaattttgacagcagtgatatttattattttccaggTTACATGTATCGcaatcttcatttattttcttttctctataAATGTCTATTGCTTTGTTCAATCCAGGCTGCTATTAAGCCTGTTCACTTTGATGCTTAACTGTGTGTCAGTTCTCTCCCCATCCTTTCTTACTAGAGTGAAAAGGACTGTTATTATAATGCTGATCACAGAAAGTTAATTACCCCATAGCATGTAACTCATGGACAAGCATTATATAATGTGCAGCATTTCAATTTtgcattacatttcatttcagcttGTGTAATAAAACCTCTTTATACTGTGTGAATTGATACTGTCCATTTATGCTTTAGAAAAAGCACAGTCAGGGTTGTGGCCCAGTTTTTCTAGTGGCACTGCAAATTTGGAGCCCCAGTCTCGGTCAAACACAGCACTCAGCTGCCCCAGTAACGTGTCTCCAGGTGAGGGAGAATGCAAAACATCTTGGGAAACCACCAACCCGACACCAGCAGTGGTGTTGAAGTAGTCAGCAGACCAGTTAGAGGTACCTGTGAAACAGAAACCTGTTCAATCTCTAGATTTGTAAAATACAACAATGCATACGTTTAGTGAGGATAGTATACAGattatgtaatataaattataattccTTATGTTgatataaaaaatgagaaaaatattgCTGCTGTactgttttgacttttttgtctttgtgaTTAACATTGCAAAacttaaactaaattaaacatCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199622 True 1215 lncRNA 0.36 1 20019157 20020371

Neighbor

gene id symbol gene type direction distance location
xgb LOC108269631,LOC108430641 coding upstream 4263 19988484 ~ 20014894 (+)
LOC113538714 plekhg3,LOC108269610,LOC107560184,LOC107726575,LOC107660984,LOC108430640,LOC107678711 coding upstream 34916 19941911 ~ 19984241 (+)
spint1a NA coding upstream 81364 19923133 ~ 19937793 (+)
LOC113538872 ankrd63 coding upstream 179310 19837258 ~ 19839847 (+)
plcb2 plcb2 coding upstream 209898 19778568 ~ 19809259 (+)
dnajc17 dnajc17 coding downstream 241237 20261608 ~ 20313158 (+)
LOC113530108 LOC108269451,LOC108430662 coding downstream 514685 20535056 ~ 20540298 (+)
zgc:194887 LOC108269450,LOC108430664,LOC107567345,LOC107678748,LOC107743909 coding downstream 520527 20540898 ~ 20544512 (+)
LOC113529967 LOC108270264,LOC108430666,LOC105908184,LOC106610840 coding downstream 718548 20738919 ~ 20813729 (+)
eif2ak4 eif2ak4,LOC107701584,LOC107673787,LOC106534337 coding downstream 823427 20843798 ~ 20896411 (+)
G168632 NA non-coding upstream 119 20018761 ~ 20019038 (+)
G168630 NA non-coding upstream 31287 19987648 ~ 19987870 (+)
G168585 NA non-coding upstream 131003 19887927 ~ 19888154 (+)
G168504 inafm2 non-coding upstream 244491 19772890 ~ 19774666 (+)
G168207 NA non-coding upstream 422190 19596423 ~ 19596967 (+)
G168634 NA non-coding downstream 263 20020634 ~ 20021068 (+)
G168635 NA non-coding downstream 2011 20022382 ~ 20022838 (+)
G168636 NA non-coding downstream 2579 20022950 ~ 20023528 (+)
G168638 NA non-coding downstream 3961 20024332 ~ 20025252 (+)
G168639 NA non-coding downstream 5735 20026106 ~ 20028336 (+)
LOC113538658 NA other upstream 96671 19913343 ~ 19922486 (+)
zfyve19 zfyve19 other upstream 132648 19879735 ~ 19886509 (+)
LOC113538915 c9h15orf52 other upstream 252576 19722780 ~ 19766581 (+)
G168191 NA other upstream 331566 19674913 ~ 19687591 (+)
prlh2r LOC108269650,LOC108425589 other upstream 1440849 18569379 ~ 18578308 (+)
G168650 cep170b other downstream 22106 20042477 ~ 20042935 (+)
zbtb42 zbtb42,LOC106610857,LOC106582697 other downstream 122343 20142714 ~ 20148628 (+)
fsip1 fsip1 other downstream 344803 20365174 ~ 20453805 (+)
LOC113530103 LOC108269986 other downstream 501224 20521595 ~ 20531222 (+)
G169577 heatr5a,LOC108412624 other downstream 1649536 21669907 ~ 21674461 (+)

Expression


Co-expression Network