G168661


Basic Information

Item Value
gene id G168661
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19923105 ~ 19924187 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU199660
tattattattaatacaatacattattcttcatttttaaaaaaaatatttattttattcattttttccctccaaaCGTACCTGGATCATACTCTTCCAGGTAGCTGCCAAAAACAGAACTCAGGACAAAGTTGCTGAAACCCTTCTTTCTGACAAAGCGGCACACTTTCTTCTGCTTATACAGACAGTTGAAGAGGAAGCAGGACTTGATGGTCCCCTCCTGAGCTCCATTTTCCATTAAGGCCAGGTTACAGTTGGACTCTTTACAGCATGCAGCCACACACTCTTTGACTCCAGTGACCTGTGGAGATCCGAGGAACTGAGCGCcatcattcactgattcatctgTGTCTAAAATGAAGTCATCCTTTCCTTTCGTAAACTTGTTTAAGCATTGTTCTGAGGGGATCTGGGCCAGCAGAAGAGTTTGCAGCAGCGATATGGTGAGAACTAACAAAGAGATCCGATAGGGAGGCATCATCATCaacttcttcatcatcatcttgtgAAATAATCTCTCTTCTCTCCACTTTGAGTACTCGGTTCAATTCAGCTTCAGACTTCTCTCCTGAAGTATTTCTTCACTTCAAGAACTCTCTCTCCACAAAATTCCTCCAACGGAAATGacaaaaaactgaaaactgaactgaaaaaaaagaaattttcgTGAAACCTTGAAGAAGGCGAATGACGTCCTCCTCTCACAGCAGGTGCGCCCGATACCTGcggaacaggaagtgaaattCGATCCGACAGAGCGCGAGCGCATGCTAGAGTACTAAACAGTACGCTGCTGGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199660 True 798 lncRNA 0.42 2 19923105 19924187

Neighbor

gene id symbol gene type direction distance location
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding downstream 14358 19891594 ~ 19908747 (-)
bub1bb bub1b coding downstream 43770 19873422 ~ 19879335 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding downstream 55940 19840371 ~ 19867165 (-)
LOC113538599 inafm2 coding downstream 148018 19772800 ~ 19775087 (-)
LOC113538986 LOC108269623,LOC108430634 coding downstream 279490 19629234 ~ 19643615 (-)
LOC113538610 pld4 coding upstream 95032 20019219 ~ 20025636 (-)
cep170b cep170b coding upstream 103106 20027293 ~ 20059002 (-)
akt1 akt1,LOC107716055,LOC107703621 coding upstream 141533 20065720 ~ 20126339 (-)
siva1 siva1 coding upstream 244943 20169130 ~ 20174078 (-)
adss1 adssl1,LOC107571830,LOC107703625,LOC107678758 coding upstream 277932 20202119 ~ 20212962 (-)
G168608 NA non-coding downstream 35275 19887315 ~ 19887830 (-)
G168493 NA non-coding downstream 156152 19766754 ~ 19766953 (-)
G168466 NA non-coding downstream 157378 19763846 ~ 19765727 (-)
LOC113538910 NA non-coding downstream 234996 19687231 ~ 19688109 (-)
LOC117598314 NA non-coding downstream 238959 19683239 ~ 19684146 (-)
G168665 NA non-coding upstream 15629 19939816 ~ 19940040 (-)
G168747 NA non-coding upstream 174940 20099127 ~ 20100572 (-)
G168750 NA non-coding upstream 182026 20106213 ~ 20106858 (-)
G168756 zbtb42,LOC106610857,LOC106582697 non-coding upstream 221080 20145267 ~ 20148736 (-)
G168758 NA non-coding upstream 225303 20149490 ~ 20149902 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 313327 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 327891 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 334203 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 956492 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 1075409 18839615 ~ 18847696 (-)
srp14 srp14,LOC106610862 other upstream 89392 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 374324 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 398577 20322764 ~ 20330746 (-)
G169119 NA other upstream 640742 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 889502 20813689 ~ 20817439 (-)

Expression


Co-expression Network