G168747


Basic Information

Item Value
gene id G168747
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20099127 ~ 20100572 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU199749
CAAAATCTATCTTTTAATATTTctcatattaaaataattgaatgaaacaaaagaggagattgtgagtttttcCCTCGTGTTTGGGAGCCCCTGTTCTATACGTGATGGAGACACGTTCATAGTGCTGAGCGTTACTCGAAACACTGAACGCCTTCACGTTAATTCCTCCTGCCGTTAGACCAGAGGCGTCAGCTGTAACTACGAAGCGACACATCTGTACTCAGCAAATTCCACCACCTGATAGTCGAACAGCTCGGATTTCTGTCCAGTCCATCAGTCCAGTTTGAAGGGAGAGGGTTTCGAGTGCTGTATAAGCATTTCTGTCAAATGATGTTTTAATATCTCGCTGACTCGGCTCATATGGCTTCAACATTTTAGCGTCACACTTGGACGTTCAGGCTAGGTGTTGCAGTCTGCCAAAAAATGCCAATCTTAGGTGTCGTTGAGGATGTTGTGTTgtcaaagagggaaaaaaaatgttaggtGATGTTTTTTTATGTGATCGATGATGTTTTgcatgtcagagagagagagaggaagcgcGTGTGAGCATAGTGGTGCCACGAACACTGTTTTTGCTGCTGCTTAGGCAGTGCAGCAGTTGTAAGATAGAGATGAATTGCGTGTgcgtgcgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagaagtAAGTTGTCAGATAGAGATGAATTCTCTTTTGAGTGCTAGAATCTTGCTCTTCATTATATTCCACTTTAGCATCCCTGAGCTCTGCAGCTGTTCTGCATGTATAAGCACTCTATCAGGGCCTGAcaggtctacacacacacacacacacacacacacacacacacacactctcacacacagagtcatttATCTCCAATTTATCTCTATCTGACAACAGCTGTAAAATCAGCAGATCTATGCATGTACAGTTTATTgccgtatacacacacatgtgcacgcACCTTTCCTCCGAGTCACACGTGTCTCTGCATGAAGATTATTATGAAGTGACGTTTAGGGTCTGTCATAAACACAGCATTTTCCTCACACTCGCCTAAACTGTCTGATACGTAAAGAGCAAGTAAACAGCAAGTAAACAGCATAATGTCATATTCTGGCTGCTGAGGCAATAGCTGATCAGCAGTTCCAGATAACACAGTGTCCGTGCCAAATACGGCGCTCTGACTTAACTTACTGGCAGGAGCCGCTGACGCTCTGCTTCCTGTTTGTGTGAACCTCTGATCAGCAGATGCCACATTGTTTTGTGCTGGTTTTGGTTTGATAACGGACATCAGTAAGAGTGTGAGGTAGTAGGTAGAAGTGAGGTAGAGCGTCTCTCGTGAGACTCGCAGCTGAAATGTTTGGAGTGTGTGCAGTCCACCAAGAGATACATGAATTTGGAGttagtgtgtggagtgtgtactGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199749 True 1417 lncRNA 0.44 2 20099127 20100572

Neighbor

gene id symbol gene type direction distance location
cep170b cep170b coding downstream 40125 20027293 ~ 20059002 (-)
LOC113538610 pld4 coding downstream 73491 20019219 ~ 20025636 (-)
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding downstream 190380 19891594 ~ 19908747 (-)
bub1bb bub1b coding downstream 219792 19873422 ~ 19879335 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding downstream 231962 19840371 ~ 19867165 (-)
siva1 siva1 coding upstream 68558 20169130 ~ 20174078 (-)
adss1 adssl1,LOC107571830,LOC107703625,LOC107678758 coding upstream 101547 20202119 ~ 20212962 (-)
inf2 inf2,LOC107745357,LOC107678755 coding upstream 119302 20219874 ~ 20255875 (-)
LOC113530110 cyp1c1,cyp1c3,LOC103357016,LOC107745367 coding upstream 268562 20369134 ~ 20372103 (-)
LOC113530102 thbs1,LOC108270370,LOC107719693,LOC107568499,LOC107687209,LOC107743901,LOC107678760 coding upstream 343623 20444195 ~ 20453800 (-)
G168665 NA non-coding downstream 159087 19939816 ~ 19940040 (-)
G168661 NA non-coding downstream 174940 19923105 ~ 19924187 (-)
G168608 NA non-coding downstream 211297 19887315 ~ 19887830 (-)
G168493 NA non-coding downstream 332174 19766754 ~ 19766953 (-)
G168466 NA non-coding downstream 333400 19763846 ~ 19765727 (-)
G168750 NA non-coding upstream 5641 20106213 ~ 20106858 (-)
G168756 zbtb42,LOC106610857,LOC106582697 non-coding upstream 44695 20145267 ~ 20148736 (-)
G168758 NA non-coding upstream 48918 20149490 ~ 20149902 (-)
G168759 NA non-coding upstream 49721 20150293 ~ 20151303 (-)
G168908 NA non-coding upstream 342425 20442997 ~ 20443772 (-)
srp14 srp14,LOC106610862 other downstream 80410 20013579 ~ 20018717 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 489349 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 503913 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 510225 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 1132514 18961708 ~ 18966613 (-)
LOC113529462 LOC108269960 other upstream 197939 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 222192 20322764 ~ 20330746 (-)
G169119 NA other upstream 464357 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 713117 20813689 ~ 20817439 (-)
bmf1 bmf other upstream 987731 21088303 ~ 21119625 (-)

Expression


Co-expression Network