G168759


Basic Information

Item Value
gene id G168759
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20150293 ~ 20151303 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU199761
GAATAGTAGAGCATAGATACAGCAGACTTTAATCAAACTTTAATCAAGTCCTAAAGATATTacaaaagtaaataacacttacaaATAACACTTACGAAAAACCCATTATTACCTTGTTCCTACGCTAAAGCCATTTTATTCTTAATATCTAAGAAGCACATACATAAATACCACCTGACACTTACAGTAACTTTGATGATGgtaacaacatttaaaaatcatggaccccttggctatgcttcacagccccactttgagaaccacctTGAAAACTTGTACAACTCTTTAAGTCAAAATGATTACACGAGAATGAGGGCGAAAACAAGTCAAAATAGTAAAAGACGATGTCATGAATGTGTAAACAATGGTAGTCTTTTATCCTGTTTAAAGTTGATATGGATCTCTAGAAGAGTTACAGCTACACTAGAGGTGTTTAGCAAGCTCTTGAGTCATCTCTGAGGTGTAGAAAACATTCCCAGCGCTCCAACACCCTTATTTACAAGTCTAGCAGCAAATCGCTACATAGTCAGGTGCTGCTTTGGTTTGGCCACATCACACTGGTTTCTAGTGAGAACATAAGAACCACAGAAGATAATAAGGAGGCCAAACTACTATCTGAAGACAAAGGGGTTAGTGGGATAAGGCCTGGGATGCTGgggggatgtttgtgtgtgtttggaaagtTTGTATGCTCTTGATGGGGGGCAGGGCTGTGGGAATCGCATATCCATGCCACTGGATTTCTTTAGATGTGCAGCCAAAGAATAATTAGGAGCCCACTTACTGAAAAATGACCGCTCAGTTTTCAAATTAGATACGCATTTTCCTCTCCCTTGGTCCTCatggttgtttgtttgctagAATGCAAATGATCCAGGAAgttatttttactgaaaaattACTCATTATGCTTAGTAAGATGTGTGTCGGTTACTGCGTAGCTCATAACAATAGCAAGAGCTTGAATGTGAAATCCTTTTCACTtcttcaaagaaaaaaataatatatccA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199761 True 1011 lncRNA 0.38 1 20150293 20151303

Neighbor

gene id symbol gene type direction distance location
akt1 akt1,LOC107716055,LOC107703621 coding downstream 23954 20065720 ~ 20126339 (-)
cep170b cep170b coding downstream 91291 20027293 ~ 20059002 (-)
LOC113538610 pld4 coding downstream 124657 20019219 ~ 20025636 (-)
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding downstream 241546 19891594 ~ 19908747 (-)
bub1bb bub1b coding downstream 270958 19873422 ~ 19879335 (-)
siva1 siva1 coding upstream 17827 20169130 ~ 20174078 (-)
adss1 adssl1,LOC107571830,LOC107703625,LOC107678758 coding upstream 50816 20202119 ~ 20212962 (-)
inf2 inf2,LOC107745357,LOC107678755 coding upstream 68571 20219874 ~ 20255875 (-)
LOC113530110 cyp1c1,cyp1c3,LOC103357016,LOC107745367 coding upstream 217831 20369134 ~ 20372103 (-)
LOC113530102 thbs1,LOC108270370,LOC107719693,LOC107568499,LOC107687209,LOC107743901,LOC107678760 coding upstream 292892 20444195 ~ 20453800 (-)
G168758 NA non-coding downstream 391 20149490 ~ 20149902 (-)
G168756 zbtb42,LOC106610857,LOC106582697 non-coding downstream 1557 20145267 ~ 20148736 (-)
G168750 NA non-coding downstream 43435 20106213 ~ 20106858 (-)
G168747 NA non-coding downstream 49721 20099127 ~ 20100572 (-)
G168665 NA non-coding downstream 210253 19939816 ~ 19940040 (-)
G168908 NA non-coding upstream 291694 20442997 ~ 20443772 (-)
G169104 NA non-coding upstream 387559 20538862 ~ 20540283 (-)
G169109 NA non-coding upstream 396342 20547645 ~ 20547877 (-)
G169118 NA non-coding upstream 412852 20564155 ~ 20564828 (-)
G169126 NA non-coding upstream 422104 20573407 ~ 20573613 (-)
srp14 srp14,LOC106610862 other downstream 131576 20013579 ~ 20018717 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 540515 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 555079 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 561391 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 1183680 18961708 ~ 18966613 (-)
LOC113529462 LOC108269960 other upstream 147208 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 171461 20322764 ~ 20330746 (-)
G169119 NA other upstream 413626 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 662386 20813689 ~ 20817439 (-)
bmf1 bmf other upstream 937000 21088303 ~ 21119625 (-)

Expression


Co-expression Network