gchfr (gchfr,LOC106583112)



Basic Information


Item Value
gene id gchfr
gene name gchfr,LOC106583112
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20322764 ~ 20330746 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU199915
GGTAAACTAAGTGACAGCGCTGTCGCTAATTCTCCAGTGCAACAGGGAGAGAAATCCTCTGGGGAAACTCGTCCCACAGCTCTGCGTCGAAAACCAAACATGCCTTACATTCTGGTCAGCACACAGATCCGcctgACCGGGCCCACCATGGTAGGTGATGAGTATTCAGATCCTGCCATCATGACCTATCTGGGAGCAAGGAAAACTACCGTGCTGGGCAACAACTTTTCAGAATACCATGTGGATGAACCACCACGATTAGTCCTGGACAAGCTTGAGAAGCTCGGCTACAGAGTTGTGGCCATGACGGGAGTTGGTCAGACTCTGGTGTGGTGCCTTCACAAAGAGACTAGTGAGCTTGGTCAACATCCTATAACGTCGTGATATGAagtatgtgtttaaaaaaaaaaaaaaaaaaaaagaccattttAATACAACATGAAACCACAAGGTTATATGTCATAAGCGGATTTGAGCAGTGTTGGCATGAGACTAGTGTTGAAAGTGCAATGGCTAGCTTTTCTcattgtgaaaatattttgtaattaaaactataaacagagaatttctctctgtctaaagCTAAACCAATCAAACTTGACATTATATAATCAAATCAGAAACAGTGCAAGGCAAGTCTGTCAGTTCAGTAGTGAGTGCTGTTTATTCCTGTTTAGACATGTTTAAATGTATGTACTTCAAATTAACCATATGAAAGGCAAGTAATTTGTAAACATATTTATGTTTCTGTCATTAATGTTGGATGCttcattaaatataattctACACATTGGTGAAAAATATCCTTTTTATAGATATGTTTTGTGGTTTGGAGAATCTCAATTTCAATTAgctaaaattttaaatgcattccAGAATATAATTTCTCATCTAGACATCATGTCATTGTTcagtttattgctttatttaacTTTGTAACGTATTCTGagttgtttacattttttactgAACTGTGTAAATCAGTGGTGTCTTGCTTCACCACATCACTGCAGAGTTCAGTATTCCACCTCATTTAACACCTGATTTAACTCATCGGAAAACTATCAAGGCCTTCTGGGCTGAATTTGGTTTGTTAGAAGATGAGAAAACACAAATCTTTGTAAGGTAGTGACCTTCTAGGACCTGTTTGACAACagtgatgtaaatgtaatatgatatgTGTGCTTCCACAAagagaac
>XM_026920020.2
ATGGTAAACTAAGTGACAGCGCTGTCGCTAATTCTCCAGTGCAACAGGGAGAGAAATCCTCTGGGGAAACTCGTCCCACAGCTCTGCGTCGAAAACCAAACATGCCTTACATTCTGGTCAGCACACAGATCCGcctgGAGACCGGGCCCACCATGGTAGGTGATGAGTATTCAGATCCTGCCATCATGACCTATCTGGGAGCAAGGAAAACTACCGTGCTGGGCAACAACTTTTCAGAATACCATGTGGATGAACCACCACGATTAGTCCTGGACAAGCTTGAGAAGCTCGGCTACAGAGTTGTGGCCATGACGGGAGTTGGTCAGACTCTGGTGTGGTGCCTTCACAAAGAGACTAGTGAGCTTGGTCAACATCCTATAACGTCGTGATATGAagtatgtgtttaaaaaaaaaaaaaaaaaaaaagaccattttAATACAACATGAAACCACAA
>XM_034308391.1
ATGGTAAACTAAGTGACAGCGCTGTCGCTAATTCTCCAGTGCAACAGGGAGAGAAATCCTCTGGGGAAACTCGTCCCACAGCTCTGCGTCGAAAACCAAACATGCCTTACATTCTGGTCAGCACACAGATCCGcctgACCGGGCCCACCATGGTAGGTGATGAGTATTCAGATCCTGCCATCATGACCTATCTGGGAGCAAGGAAAACTACCGTGCTGGGCAACAACTTTTCAGAATACCATGTGGATGAACCACCACGATTAGTCCTGGACAAGCTTGAGAAGCTCGGCTACAGAGTTGTGGCCATGACGGGAGTTGGTCAGACTCTGGTGTGGTGCCTTCACAAAGAGACTAGTGAGCTTGGTCAACATCCTATAACGTCGTGATATGAagtatgtgtttaaaaaaaaaaaaaaaaaaaaagaccattttAATACAACATGAAACCACAA

Function


symbol description
gchfr Predicted to enable GTP cyclohydrolase binding activity. Predicted to be involved in negative regulation of GTP cyclohydrolase I activity. Predicted to act upstream of or within negative regulation of biosynthetic process. Predicted to be located in cytosol and nuclear membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in liver. Orthologous to human GCHFR (GTP cyclohydrolase I feedback regulator).

NR:

description
PREDICTED: GTP cyclohydrolase 1 feedback regulatory protein

GO:

id name namespace
GO:0009890 negative regulation of biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU199915 True 1200 TUCP 0.38 3 20322764 20330744
XM_026920020.2 False 455 mRNA 0.46 3 20323514 20330746
XM_034308391.1 False 452 mRNA 0.46 3 20323514 20330746

Neighbor


gene id symbol gene type direction distance location
inf2 inf2,LOC107745357,LOC107678755 coding downstream 66889 20219874 ~ 20255875 (-)
adss1 adssl1,LOC107571830,LOC107703625,LOC107678758 coding downstream 109802 20202119 ~ 20212962 (-)
siva1 siva1 coding downstream 148686 20169130 ~ 20174078 (-)
akt1 akt1,LOC107716055,LOC107703621 coding downstream 196425 20065720 ~ 20126339 (-)
cep170b cep170b coding downstream 263762 20027293 ~ 20059002 (-)
LOC113530110 cyp1c1,cyp1c3,LOC103357016,LOC107745367 coding upstream 38388 20369134 ~ 20372103 (-)
LOC113530102 thbs1,LOC108270370,LOC107719693,LOC107568499,LOC107687209,LOC107743901,LOC107678760 coding upstream 113449 20444195 ~ 20453800 (-)
acp7 acp7,papl coding upstream 170403 20501149 ~ 20521426 (-)
chrm5a LOC108269673,LOC108430663 coding upstream 214020 20544766 ~ 20546294 (-)
LOC113530100 LOC108270491,LOC108430665,LOC106610839,LOC107678700,LOC106587081,LOC102312465,LOC105908186 coding upstream 239137 20569883 ~ 20728827 (-)
G168759 NA non-coding downstream 171461 20150293 ~ 20151303 (-)
G168758 NA non-coding downstream 172862 20149490 ~ 20149902 (-)
G168756 zbtb42,LOC106610857,LOC106582697 non-coding downstream 174028 20145267 ~ 20148736 (-)
G168750 NA non-coding downstream 215906 20106213 ~ 20106858 (-)
G168747 NA non-coding downstream 222192 20099127 ~ 20100572 (-)
G168908 NA non-coding upstream 112251 20442997 ~ 20443772 (-)
G169104 NA non-coding upstream 208116 20538862 ~ 20540283 (-)
G169109 NA non-coding upstream 216899 20547645 ~ 20547877 (-)
G169118 NA non-coding upstream 233409 20564155 ~ 20564828 (-)
G169126 NA non-coding upstream 242661 20573407 ~ 20573613 (-)
LOC113529462 LOC108269960 other downstream 21210 20298511 ~ 20301554 (-)
srp14 srp14,LOC106610862 other downstream 304047 20013579 ~ 20018717 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 712986 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 727550 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 733862 19586924 ~ 19588902 (-)
G169119 NA other upstream 234183 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 482943 20813689 ~ 20817439 (-)
bmf1 bmf other upstream 757557 21088303 ~ 21119625 (-)
G170023 NA other upstream 1784819 22115565 ~ 22115876 (-)
G170435 NA other upstream 2524748 22855494 ~ 22863767 (-)

Expression



Co-expression Network