G169118


Basic Information

Item Value
gene id G169118
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20564155 ~ 20564828 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU200194
aaaccacggcagggggcagagctttctcttaccaagccccaaaattatggaatagcctcccagttaatgtatgTGAAGCAGACatggtctcagtgtttaagtcgaggttgaagacttatttatttaacctagcatttagcgactagtgtttttatcaaaggagtagatctgggggactcgtggatgttgagttttatctccacacggtgactgtgagtgtacctaaccactttccttctccttctgccgagctacactcctgagctgccggtgatccagacctcccccccttcactctggacctgtccactggcaatgcttcatactgccacgaaaacgcttcagctgttttccatggactacaccaacacac
>TU200196
tttaacctagcatttagcgactagtgtttttatcaaaggagtagatctgggggactcgtggatgttgagttttatctccacacggtgactgtgagtgtacctaaccactttccttctccttctgccgagctacactcctgagctgccggtgatccagacctcccccccttcactctggacctgtccactggcaatgcttcatactgccacgaaaacgcttcagctgttttccatggactacaccaacacacattgtactcacgcacactacagtgtaaacccatatgaggatgggttctctgttgagcctggttcctctcaaggtttcttcctatcaccatctcagggagtttttccttgccaccgtcgccctgcttgctcatcagagacggcacacacacacacttcactttacttttgtttgtgtaaagctgctttgagacaatgacctttgtaaaaagcgctatacaaataaaaatgaattgaattgaattgaattgttagtggaaaaaaaagagtttctGCAGAGACTGTGGAGAGCTAACATCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200194 False 373 lncRNA 0.48 1 20564456 20564828
TU200196 True 552 lncRNA 0.46 1 20564155 20564706

Neighbor

gene id symbol gene type direction distance location
chrm5a LOC108269673,LOC108430663 coding downstream 17861 20544766 ~ 20546294 (-)
acp7 acp7,papl coding downstream 42729 20501149 ~ 20521426 (-)
LOC113530102 thbs1,LOC108270370,LOC107719693,LOC107568499,LOC107687209,LOC107743901,LOC107678760 coding downstream 110355 20444195 ~ 20453800 (-)
LOC113530110 cyp1c1,cyp1c3,LOC103357016,LOC107745367 coding downstream 192052 20369134 ~ 20372103 (-)
inf2 inf2,LOC107745357,LOC107678755 coding downstream 308280 20219874 ~ 20255875 (-)
LOC113530100 LOC108270491,LOC108430665,LOC106610839,LOC107678700,LOC106587081,LOC102312465,LOC105908186 coding upstream 5055 20569883 ~ 20728827 (-)
LOC113530231 NA coding upstream 168102 20732930 ~ 20733052 (-)
arhgap11a LOC108270194 coding upstream 256973 20821801 ~ 20835679 (-)
actc1b acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding upstream 273229 20838057 ~ 20842152 (-)
LOC113530222 LOC108269994 coding upstream 331806 20896634 ~ 20956265 (-)
G169109 NA non-coding downstream 16278 20547645 ~ 20547877 (-)
G169104 NA non-coding downstream 23872 20538862 ~ 20540283 (-)
G168908 NA non-coding downstream 120383 20442997 ~ 20443772 (-)
G168759 NA non-coding downstream 412852 20150293 ~ 20151303 (-)
G168758 NA non-coding downstream 414253 20149490 ~ 20149902 (-)
G169126 NA non-coding upstream 8579 20573407 ~ 20573613 (-)
LOC113529548 NA non-coding upstream 666115 21230943 ~ 21241637 (-)
G169424 NA non-coding upstream 739378 21304206 ~ 21304537 (-)
G169435 NA non-coding upstream 753398 21318226 ~ 21318440 (-)
G169454 NA non-coding upstream 803612 21368440 ~ 21373041 (-)
gchfr gchfr,LOC106583112 other downstream 233409 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 262601 20298511 ~ 20301554 (-)
srp14 srp14,LOC106610862 other downstream 545438 20013579 ~ 20018717 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 954377 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 968941 19589368 ~ 19595214 (-)
G169119 NA other upstream 101 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 248861 20813689 ~ 20817439 (-)
bmf1 bmf other upstream 523475 21088303 ~ 21119625 (-)
G170023 NA other upstream 1550737 22115565 ~ 22115876 (-)
G170435 NA other upstream 2290666 22855494 ~ 22863767 (-)

Expression


Co-expression Network