grem1b (LOC108269477)


Basic Information

Item Value
gene id grem1b
gene name LOC108269477
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20813689 ~ 20817439 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU200304
CCCCCATCagtgcgtgtgcgcgcgcgagtgcgtgtgtgtgcgtgcgtgcgtgcgtccGTGCGTGAGCGTGTGTCTGCGCGtgagcgtgtgtatgtgtgtgtgtgtgtctatggcatCGGTATGAGCTCTGTACACTCTCTCCAGCACACTTGATCATCTCTGATCCACACATTCGGCACTGGATTTTCTCCGGAAAGAAGGATTGATCACAAAGGTCTGATTGCCTTTTTCTTCAGACATCTCGACATAACTGCACTCATTAAAGCTCTGAGCTCTGACAGGATGATGAGATTGGTGCAGCTCACGTGCGCAGTGCTCTTGCTGTCGGTTCTTGTGTCCTGCACGGCGGAAACCAGAGCCACTCAGGGCGCAATTCCTAATCCGGGCAAAAGCAAACCAAACGAGTCGGAGCGACGACAGGGCGGCACTTCCTCATTGGCATCTTCCTCATCCTCGGGCAGAGGTAGAGGCTCGTCTTCCTCTGCAGAAGAGGTGCTGGAGTCGAGTCAGGAGGCGCTGCTTGTGACCGAGCGCCGCTACCTGAAGCGCGACTGGTGCAAGACGCAGCCGCTGAAGCAGACACTGCACGAGGAAGGCTGCGTGAGCATCACCATCCTCAATCGCTTCTGCTACGGCCAGTGCAACTCCTTCTACATCCCGCGCCATGTGCGCAGAGAGGAAGGAGCTTTCCAGTCGTGTTCGTTCTGCAAGCCCAGGCGCTTCACCACCATGACCTACACGCTGTCCTGCCCCGACCTTCAGCCGCCCACCCGCAAGAAGCGCGTGCAGCGTGTCAAGCAGTGCCGCTGCATCTCCATCGACCTGG
>XM_026919607.2
CCTCACCTCTCCAACCCCAGACACACTCCTCTCCTCCCATCCTCTGCCTAAACTCGCCCATTTCTCTCAAGTGGCTTCGGGGAAGTGATGAGGGGGTGAGTGTTAGATGGGGGCGGAAAGTTTGGGTTCTGCTCGCGTCGTGTCTGGCCAATAATGTGCAGAGAGCAGCCgtgaacatcatttaaaaaggAGACAGTCGGGCGCTGCTGCGATTCCTATTAAACCCCCATCagtgcgtgtgcgcgcgcgagtgcgtgtgtgtgcgtgcgtgcgtgcgtccGTGCGTGAGCGTGTGTCTGCGCGtgagcgtgtgtatgtgtgtgtgtgtgtctatggcatCGGTATGAGCTCTGTACACTCTCTCCAGCACACTTGATCATCTCTGATCCACACATTCGGCACTGGATTTTCTCCGGAAAGAAGGATTGATCACAAAGGTCTGATTGCCTTTTTCTTCAGACATCTCGACATAACTGCACTCATTAAAGCTCTGAGCTCTGACAGGATGATGAGATTGGTGCAGCTCACGTGCGCAGTGCTCTTGCTGTCGGTTCTTGTGTCCTGCACGGCGGAAACCAGAGCCACTCAGGGCGCAATTCCTAATCCGGGCAAAAGCAAACCAAACGAGTCGGAGCGACGACAGGGCGGCACTTCCTCATTGGCATCTTCCTCATCCTCGGGCAGAGGTAGAGGCTCGTCTTCCTCTGCAGAAGAGGTGCTGGAGTCGAGTCAGGAGGCGCTGCTTGTGACCGAGCGCCGCTACCTGAAGCGCGACTGGTGCAAGACGCAGCCGCTGAAGCAGACACTGCACGAGGAAGGCTGCGTGAGCATCACCATCCTCAATCGCTTCTGCTACGGCCAGTGCAACTCCTTCTACATCCCGCGCCATGTGCGCAGAGAGGAAGGAGCTTTCCAGTCGTGTTCGTTCTGCAAGCCCAGGCGCTTCACCACCATGACCTACACGCTGTCCTGCCCCGACCTTCAGCCGCCCACCCGCAAGAAGCGCGTGCAGCGTGTCAAGCAGTGCCGCTGCATCTCCATCGACCTGGACTGACGCGGGACATCCACAAATGCTGCTTTTGGGGAAACGTCCTTGAGTCGTTAAGTTCTGAGGACTTCTTTGGATGAAAAGTACaaattaaaagcacattttcaaGAAAAACAAGGAGAAGCACTGATATTGCGCAATCAGACGAACTCCAGCCAAGCGCACCGTCATGGACACAACTCCCATTTCATCACGCATTCACATTTTCCTGATTGACACTCCAAATCCCCGCCTCATGCAAGCATTAAACATATACAGGTATCCTCACTTTTTCCTCACTTTTGCCATCTGATTTTAAAAGGAGCAAACGTGCACAATACAAGGCGAGACGAATCCACTGGCAGAACCCACAGCACCACTCTGCATCATTCTGGAAACATTCTGGGACTTTACAGCCTAATCATGTAATTATAgctattaatatgtaataatgtaacagcctggttttattttctttgggttttttttttggagagtgCTGGAAGGTGTTTTTTCCACCATGTGGAAATTAGTGGTGATCTAATAAGACGTGTAAAgaagacttttatttaatatgataGAAGGACGCTTGTATAATAGCAGGTGTATTATATTGTCCATTTGTTGTGaattttgttttgtggacatttttATGTACCAGTTATTATAATAAGACCTGTGTGAGAATGACATCATCTTAAACACTTAgcacatgatttatttaaaataaaaaaaaaaaaaagtcttgcaAAAAGGGTACGGAACTTGTTTATAATGTACTTACTGCGGTCCATTCTGTTTACAAGTCTTTCTACACGACTGTTTAATGGGATTGCTGCTTTATCTTGACTGTAGGCCTGTtgagttaatgtattaataaaaagtgaaataaat

Function

NR:

description
gremlin-1-like

GO: NA

KEGG:

id description
K23318 GREM; gremlin

RNA

RNA id representative length rna type GC content exon number start site end site
TU200304 False 826 TUCP 0.58 2 20814561 20817216
XM_026919607.2 True 1921 mRNA 0.48 2 20813689 20817439

Neighbor

gene id symbol gene type direction distance location
LOC113530231 NA coding downstream 80637 20732930 ~ 20733052 (-)
LOC113530100 LOC108270491,LOC108430665,LOC106610839,LOC107678700,LOC106587081,LOC102312465,LOC105908186 coding downstream 84862 20569883 ~ 20728827 (-)
chrm5a LOC108269673,LOC108430663 coding downstream 267395 20544766 ~ 20546294 (-)
acp7 acp7,papl coding downstream 292263 20501149 ~ 20521426 (-)
LOC113530102 thbs1,LOC108270370,LOC107719693,LOC107568499,LOC107687209,LOC107743901,LOC107678760 coding downstream 359889 20444195 ~ 20453800 (-)
arhgap11a LOC108270194 coding upstream 4362 20821801 ~ 20835679 (-)
actc1b acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding upstream 20618 20838057 ~ 20842152 (-)
LOC113530222 LOC108269994 coding upstream 79195 20896634 ~ 20956265 (-)
LOC113529663 NA coding upstream 209068 21026507 ~ 21040538 (-)
ankrd9 ankrd9 coding upstream 364326 21181765 ~ 21183223 (-)
G169126 NA non-coding downstream 240076 20573407 ~ 20573613 (-)
G169118 NA non-coding downstream 248861 20564155 ~ 20564828 (-)
G169109 NA non-coding downstream 265812 20547645 ~ 20547877 (-)
G169104 NA non-coding downstream 273406 20538862 ~ 20540283 (-)
G168908 NA non-coding downstream 369917 20442997 ~ 20443772 (-)
LOC113529548 NA non-coding upstream 413504 21230943 ~ 21241637 (-)
G169424 NA non-coding upstream 486767 21304206 ~ 21304537 (-)
G169435 NA non-coding upstream 500787 21318226 ~ 21318440 (-)
G169454 NA non-coding upstream 551001 21368440 ~ 21373041 (-)
LOC113529764 NA non-coding upstream 688996 21506435 ~ 21514989 (-)
G169119 NA other downstream 247890 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 482943 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 512135 20298511 ~ 20301554 (-)
srp14 srp14,LOC106610862 other downstream 794972 20013579 ~ 20018717 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 1203911 19600130 ~ 19609778 (-)
bmf1 bmf other upstream 270864 21088303 ~ 21119625 (-)
G170023 NA other upstream 1298126 22115565 ~ 22115876 (-)
G170435 NA other upstream 2038055 22855494 ~ 22863767 (-)
greb1 greb1 other upstream 2331304 23148743 ~ 23179511 (-)
luzp1 luzp1 other upstream 3672799 24490238 ~ 24544079 (-)

Expression


Co-expression Network