Gene
RNA
| Item | Value |
|---|---|
| gene id | G169611 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 21539301 ~ 21539545 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU200781 | True | 245 | lncRNA | 0.44 | 1 | 21539301 | 21539545 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| prkd1 | prkd1,LOC107590910,LOC107719483 | coding | downstream | 101192 | 21391646 ~ 21438109 (-) |
| ankrd9 | ankrd9 | coding | downstream | 356078 | 21181765 ~ 21183223 (-) |
| LOC113529663 | NA | coding | downstream | 498763 | 21026507 ~ 21040538 (-) |
| LOC113530222 | LOC108269994 | coding | downstream | 583036 | 20896634 ~ 20956265 (-) |
| actc1b | acta1,act2,LOC105024319,LOC108430668,LOC102689871 | coding | downstream | 697149 | 20838057 ~ 20842152 (-) |
| strn3 | strn3,LOC107590905,LOC106611207,LOC107694787 | coding | upstream | 17538 | 21557083 ~ 21591367 (-) |
| hectd1 | hectd1,LOC107582380,LOC107697712,LOC107719534,LOC100380626,LOC102302438 | coding | upstream | 58564 | 21598109 ~ 21649666 (-) |
| heatr5a | heatr5a | coding | upstream | 113168 | 21652713 ~ 21737438 (-) |
| mis18bp1 | mis18bp1,LOC108261907 | coding | upstream | 203210 | 21742755 ~ 21760301 (-) |
| mdga2a | mdga2,mamdc1 | coding | upstream | 241475 | 21781020 ~ 22088387 (-) |
| LOC113529764 | NA | non-coding | downstream | 24312 | 21506435 ~ 21514989 (-) |
| G169454 | NA | non-coding | downstream | 166260 | 21368440 ~ 21373041 (-) |
| G169435 | NA | non-coding | downstream | 220861 | 21318226 ~ 21318440 (-) |
| G169424 | NA | non-coding | downstream | 234764 | 21304206 ~ 21304537 (-) |
| LOC113529548 | NA | non-coding | downstream | 297664 | 21230943 ~ 21241637 (-) |
| G169647 | LOC108270035 | non-coding | upstream | 220979 | 21760524 ~ 21762786 (-) |
| G169648 | NA | non-coding | upstream | 225413 | 21764958 ~ 21765221 (-) |
| G169650 | NA | non-coding | upstream | 226557 | 21766102 ~ 21767152 (-) |
| G169651 | NA | non-coding | upstream | 228143 | 21767688 ~ 21767925 (-) |
| G169653 | NA | non-coding | upstream | 228824 | 21768369 ~ 21768742 (-) |
| bmf1 | bmf | other | downstream | 419676 | 21088303 ~ 21119625 (-) |
| grem1b | LOC108269477 | other | downstream | 721862 | 20813689 ~ 20817439 (-) |
| G169119 | NA | other | downstream | 973502 | 20564929 ~ 20565799 (-) |
| gchfr | gchfr,LOC106583112 | other | downstream | 1208555 | 20322764 ~ 20330746 (-) |
| LOC113529462 | LOC108269960 | other | downstream | 1237747 | 20298511 ~ 20301554 (-) |
| G170023 | NA | other | upstream | 576020 | 22115565 ~ 22115876 (-) |
| G170435 | NA | other | upstream | 1315949 | 22855494 ~ 22863767 (-) |
| greb1 | greb1 | other | upstream | 1609198 | 23148743 ~ 23179511 (-) |
| luzp1 | luzp1 | other | upstream | 2950693 | 24490238 ~ 24544079 (-) |
| G171256 | NA | other | upstream | 3241737 | 24781282 ~ 24926224 (-) |
