G169647 (LOC108270035)


Basic Information

Item Value
gene id G169647
gene name LOC108270035
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21760524 ~ 21762786 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU200827
CGACTTTTGAGAATgtattagctactttcccctgaaaagagtcGGCAACACTGAATATAATgcaactaaataataaattaaacaagcCATCACTTTTTGCAACTTACCAGGCATGTGGTTTGCTTGTGGAAGGAAGAGGGCATCGTTGGAGACAGGGCTCTGATTAGATCCCACTTTTAAAGAGAGTTGTTTTAATTTTGGCAGGCGTTGTAATAGATTATGAAATGCTGCTGTAGGTATGGGTTTGCTGCAAGCATGGTAGTGAAGTGAAGTCAGATTATTGAGCTGGGAAAGAGCATTAATAATGTCTGACGTTGGAGCACAGACCACCTCACACAGGCTGAGATGCGACAGCTCGCGCAGTGTTGATAGTGATGTTAAACTCGGACACACACACCGCCGAAGCACAAGTCGCGTTAGGTTTTTAAACTCACTAAGTGAATTAAGTGCACTGACACAGCACTCATCCACAGTAACTGAGTGAATCCACGGAAGCCGCAACGCAAGCTGCTTCCACTCTTTTCCATTCATCTTTAGCCCCACAACCGATGCTATCTTCCTGTTGATGAGAGTTCTCCAGGAATGAGACGTGAATGAGCTGATTTTTCCaatgtacagtgtggtgttctTCCACAAAACGGGGCGATCGATCAGTCTCATAAAAAATCTACAGCTAGAGCGAACGCTTAATTTGTCAGAAGTGGAAAGGAAATGAAACACGTGGACCCACACTTCTTCTGGTAGGATAAACTCTTCCATCATTTACTCCAACCTacaccaaataaataatacgtaatgtaataaaaatgtattttaattttggaTTTAAAACAATAGTTATAACGGCGACGTTATGCTCGGCAGTGAACACACACGCCTCCTCAAAACTTTTACTTGACTTCCTGGAAAGCAAGGTTGCCAGATCTGAGTACCAAAATCGCCCAATACCGACCAACCAAGACCAAACCTTACAATATGTCACTTCCAAACCATGGGCACgtctttgtttttaatgtttaaatgccACCCTTAATACGAAGCTCCGAGGAGCGTGTCAGAAATCAATGGACActgtgaatgaaagaaaaagaagttaCAGAGCATGTCCGTTCCTAAAGCATTTTTAATCTAAAACTACGTCAATCCGCGTCCCCCGCCCGATGTTCTACGTGCTTGTGCACAGATTCTTATGTTTCTTGACTCGCTTGTGTgccatttcactacattacagcACAAATAACTCATATAGCGTATGTTAAAGTATATTAATTCTCTGCTGGGAACAGCATCAGTTACCACAGCAGATTCTCTTAGTAACTGgaatattttaattgatttaaaaaaaaatctgaataaaaggAAAGTTTGCCGAAATATGGTAGCTTAATACGGcatttatttaactgtttttttttgtttgttttttttgttaataagcCATTTATTTaactggttttctttttttatttgttttgctttttttgtgttgtaGCAATGCCACCcaagcaaaacaaataaaaaaaagaggattACATAAAAACACCAAACAGCCCATGTTTTTAGCCTTCTTGTTTACTATAGGTAGACAAatctttaaatattgttttatatcttatatggaaaaaacaaaataaatcctTTGCAATTGTCCTTTATAACCCTAGCACGTTTCGTGATGTTTTTGCATGCATGCGGGATTGCATTGATTTTTATACTGCCTTAGACTGTACTACCGCGGAACAATTGTTCCTGAGTATTGTTTCCGCCGGACGGGAATGTGAAAGCATAAGGCTTGGAATATAGTTAATCAAACTAATCTAAGCTTCGAGATTAACCTGACACGATGCAGGTGTTTTCAAAAGCATTTGTTTCCATATTAACTCAGCGGGTCTTACGATTAGCTTCGTTTGTGGAACTGAAATTGACGCAAATTAGCCGGGCTTATCGAAATAAACCTGTCCTATCGAGTTAGCTCGTTTTGTGTAAGGCCGCTTGTAAAGGGTGGGTTATTTTAACCCTGCCCCCAGCGCTAGGAATGGCTAGGTACTAACCCTCAAAGGCATTGTCCAATCAGCAGGCTAGTTTATGTTTCGTGCTATTGGCGGAaccttttctttgtttgttttgttttaattaaacaaaaataagttATGATTATACAGTCACACGAgtaaattaaacatttgcatATTTGGTCAGATTGATAAAGTGACTATAAACCAAATAACAtgcaaacattaaaaatacttaCATATATAGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200827 True 2263 lncRNA 0.38 1 21760524 21762786

Neighbor

gene id symbol gene type direction distance location
mis18bp1 mis18bp1,LOC108261907 coding downstream 223 21742755 ~ 21760301 (-)
heatr5a heatr5a coding downstream 23086 21652713 ~ 21737438 (-)
hectd1 hectd1,LOC107582380,LOC107697712,LOC107719534,LOC100380626,LOC102302438 coding downstream 110858 21598109 ~ 21649666 (-)
strn3 strn3,LOC107590905,LOC106611207,LOC107694787 coding downstream 169157 21557083 ~ 21591367 (-)
prkd1 prkd1,LOC107590910,LOC107719483 coding downstream 322415 21391646 ~ 21438109 (-)
mdga2a mdga2,mamdc1 coding upstream 18234 21781020 ~ 22088387 (-)
pole2 pole2 coding upstream 374908 22137694 ~ 22146800 (-)
lrr1 lrr1 coding upstream 410480 22173266 ~ 22183862 (-)
LOC113529708 nemf coding upstream 434767 22197553 ~ 22241003 (-)
wdr20a wdr20 coding upstream 498762 22261548 ~ 22274855 (-)
G169611 NA non-coding downstream 220979 21539301 ~ 21539545 (-)
LOC113529764 NA non-coding downstream 245535 21506435 ~ 21514989 (-)
G169454 NA non-coding downstream 387483 21368440 ~ 21373041 (-)
G169435 NA non-coding downstream 442084 21318226 ~ 21318440 (-)
G169424 NA non-coding downstream 455987 21304206 ~ 21304537 (-)
G169648 NA non-coding upstream 2172 21764958 ~ 21765221 (-)
G169650 NA non-coding upstream 3316 21766102 ~ 21767152 (-)
G169651 NA non-coding upstream 4902 21767688 ~ 21767925 (-)
G169653 NA non-coding upstream 5583 21768369 ~ 21768742 (-)
LOC117598283 NA non-coding upstream 228247 21991033 ~ 21992835 (-)
bmf1 bmf other downstream 640899 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 943085 20813689 ~ 20817439 (-)
G169119 NA other downstream 1194725 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 1429778 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 1458970 20298511 ~ 20301554 (-)
G170023 NA other upstream 352779 22115565 ~ 22115876 (-)
G170435 NA other upstream 1092708 22855494 ~ 22863767 (-)
greb1 greb1 other upstream 1385957 23148743 ~ 23179511 (-)
luzp1 luzp1 other upstream 2727452 24490238 ~ 24544079 (-)
G171256 NA other upstream 3018496 24781282 ~ 24926224 (-)

Expression


Co-expression Network