G169650


Basic Information

Item Value
gene id G169650
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21766102 ~ 21767152 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU200830
CACTGAGTGGTTAATAAGTGCAGCTACAAACTCAAACAAAAGCTAACATTAGTGTAGGCCAGCAGTGTACTATATCCCCTACAGAATGACCTTTCCTATTCAGCTATAAACCATACCGTTGACAAAGGGTGAGGAAGGACACTGTTTGTTTACATAAACTATACATTCTGCCTGCCTGGGATAGTCACAACCTACCCTTTGAAGCTCACTTGAAGTTATCTGCAAGACATTCAACTACCAGGATGGCCATGTTTGGTGTCAGATGCATTATAAAATCATGCTTGAAACGTTCCATGCATGCACAACAGTACAGGTTAATGATTTAGGCATTTCAAGAACATGCAAAAGGTGCAATCATTGGGGTGTGTGAACTGGAATTCCACCCCAGGACTTCCTTATGGAACAACAACCAGTCAGCACCACTGAATGAGGAGAGTCAGGAACAGTGATTCTCAACTGATGCAATGCCTGACCATCAGGACCAAGCAAGGAGAGATCGAACTTAACAATAAAGCTACTCTACAAACCTTCTTCAATAATGGCATGGTAGTTTAGCTACAATTAGTTTGTTAATTAGATCCACTCTTTTGCCAACTTTTGCCCTCAATGTCTGTCACTCAATTTCATACTAACACTTTTTTGTATGACTACAGTGGCACCTAGTGGAGGTCTACCAGCATGGCAGAGAGGATCATCCATCcagtttggaaatgccaatcatgTCCTACAACCTATGTCTTTCGACTGGAGGAagaaacctggaggaaacccctcaaggatggggagaacatgcaagctttATTAATGAGCTGAACATGAATTTGTATTTCAAGTTCTGTGTACAGACATGCTGTATGGGCTGAATATCAGTAATttgcacaaaaacaagcatttggGTCTTTTGGTCCTGACAAATGAATAACATTAACTCTGTAGTTGGTCTGGATGTGCATTTTTTGAGTCAGATCCTTTAGAGCTGAATTTGGTCCTGAATTAGGGTCCAGAATGACTAAATGCTTAAGATGGGACAACTGTGCAAGTCCCAAGAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200830 True 1051 lncRNA 0.41 1 21766102 21767152

Neighbor

gene id symbol gene type direction distance location
mis18bp1 mis18bp1,LOC108261907 coding downstream 5801 21742755 ~ 21760301 (-)
heatr5a heatr5a coding downstream 28664 21652713 ~ 21737438 (-)
hectd1 hectd1,LOC107582380,LOC107697712,LOC107719534,LOC100380626,LOC102302438 coding downstream 116436 21598109 ~ 21649666 (-)
strn3 strn3,LOC107590905,LOC106611207,LOC107694787 coding downstream 174735 21557083 ~ 21591367 (-)
prkd1 prkd1,LOC107590910,LOC107719483 coding downstream 327993 21391646 ~ 21438109 (-)
mdga2a mdga2,mamdc1 coding upstream 13868 21781020 ~ 22088387 (-)
pole2 pole2 coding upstream 370542 22137694 ~ 22146800 (-)
lrr1 lrr1 coding upstream 406114 22173266 ~ 22183862 (-)
LOC113529708 nemf coding upstream 430401 22197553 ~ 22241003 (-)
wdr20a wdr20 coding upstream 494396 22261548 ~ 22274855 (-)
G169648 NA non-coding downstream 881 21764958 ~ 21765221 (-)
G169647 LOC108270035 non-coding downstream 3316 21760524 ~ 21762786 (-)
G169611 NA non-coding downstream 226557 21539301 ~ 21539545 (-)
LOC113529764 NA non-coding downstream 251113 21506435 ~ 21514989 (-)
G169454 NA non-coding downstream 393061 21368440 ~ 21373041 (-)
G169651 NA non-coding upstream 536 21767688 ~ 21767925 (-)
G169653 NA non-coding upstream 1217 21768369 ~ 21768742 (-)
LOC117598283 NA non-coding upstream 223881 21991033 ~ 21992835 (-)
LOC113529722 NA non-coding upstream 225805 21992957 ~ 21997321 (-)
G170008 NA non-coding upstream 324808 22091960 ~ 22092303 (-)
bmf1 bmf other downstream 646477 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 948663 20813689 ~ 20817439 (-)
G169119 NA other downstream 1200303 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 1435356 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 1464548 20298511 ~ 20301554 (-)
G170023 NA other upstream 348413 22115565 ~ 22115876 (-)
G170435 NA other upstream 1088342 22855494 ~ 22863767 (-)
greb1 greb1 other upstream 1381591 23148743 ~ 23179511 (-)
luzp1 luzp1 other upstream 2723086 24490238 ~ 24544079 (-)
G171256 NA other upstream 3014130 24781282 ~ 24926224 (-)

Expression


Co-expression Network