Gene
RNA
| Item | Value |
|---|---|
| gene id | G169651 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 21767688 ~ 21767925 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| zinc finger and SCAN domain-containing protein 2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU200831 | True | 238 | lncRNA | 0.45 | 1 | 21767688 | 21767925 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mis18bp1 | mis18bp1,LOC108261907 | coding | downstream | 7387 | 21742755 ~ 21760301 (-) |
| heatr5a | heatr5a | coding | downstream | 30250 | 21652713 ~ 21737438 (-) |
| hectd1 | hectd1,LOC107582380,LOC107697712,LOC107719534,LOC100380626,LOC102302438 | coding | downstream | 118022 | 21598109 ~ 21649666 (-) |
| strn3 | strn3,LOC107590905,LOC106611207,LOC107694787 | coding | downstream | 176321 | 21557083 ~ 21591367 (-) |
| prkd1 | prkd1,LOC107590910,LOC107719483 | coding | downstream | 329579 | 21391646 ~ 21438109 (-) |
| mdga2a | mdga2,mamdc1 | coding | upstream | 13095 | 21781020 ~ 22088387 (-) |
| pole2 | pole2 | coding | upstream | 369769 | 22137694 ~ 22146800 (-) |
| lrr1 | lrr1 | coding | upstream | 405341 | 22173266 ~ 22183862 (-) |
| LOC113529708 | nemf | coding | upstream | 429628 | 22197553 ~ 22241003 (-) |
| wdr20a | wdr20 | coding | upstream | 493623 | 22261548 ~ 22274855 (-) |
| G169650 | NA | non-coding | downstream | 536 | 21766102 ~ 21767152 (-) |
| G169648 | NA | non-coding | downstream | 2467 | 21764958 ~ 21765221 (-) |
| G169647 | LOC108270035 | non-coding | downstream | 4902 | 21760524 ~ 21762786 (-) |
| G169611 | NA | non-coding | downstream | 228143 | 21539301 ~ 21539545 (-) |
| LOC113529764 | NA | non-coding | downstream | 252699 | 21506435 ~ 21514989 (-) |
| G169653 | NA | non-coding | upstream | 444 | 21768369 ~ 21768742 (-) |
| LOC117598283 | NA | non-coding | upstream | 223108 | 21991033 ~ 21992835 (-) |
| LOC113529722 | NA | non-coding | upstream | 225032 | 21992957 ~ 21997321 (-) |
| G170008 | NA | non-coding | upstream | 324035 | 22091960 ~ 22092303 (-) |
| G170017 | NA | non-coding | upstream | 343654 | 22111579 ~ 22111916 (-) |
| bmf1 | bmf | other | downstream | 648063 | 21088303 ~ 21119625 (-) |
| grem1b | LOC108269477 | other | downstream | 950249 | 20813689 ~ 20817439 (-) |
| G169119 | NA | other | downstream | 1201889 | 20564929 ~ 20565799 (-) |
| gchfr | gchfr,LOC106583112 | other | downstream | 1436942 | 20322764 ~ 20330746 (-) |
| LOC113529462 | LOC108269960 | other | downstream | 1466134 | 20298511 ~ 20301554 (-) |
| G170023 | NA | other | upstream | 347640 | 22115565 ~ 22115876 (-) |
| G170435 | NA | other | upstream | 1087569 | 22855494 ~ 22863767 (-) |
| greb1 | greb1 | other | upstream | 1380818 | 23148743 ~ 23179511 (-) |
| luzp1 | luzp1 | other | upstream | 2722313 | 24490238 ~ 24544079 (-) |
| G171256 | NA | other | upstream | 3013357 | 24781282 ~ 24926224 (-) |
