G169692 (LOC107990201)


Basic Information

Item Value
gene id G169692
gene name LOC107990201
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21819281 ~ 21820059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU200872
tgtgtttgtagacttggAGAAGGCGTATCACAGGGTgccaagagaagagctgtggtactgtatgaggAAGTCAGGAGTAGCAGAGAGGTATGTCAGAGTGGTGCAGAACATGTatgagaggagcaggacagtggtGAGGTGTCCTATAGGAGTTCAAAGTGGAGGTGGGACTGCATCAGGGATCGGCTCTGAGCCCCTTCCtgtttgctatggtgatggaccagttgtcagaggaggtcagacaggagtctccttacacaatgatgtttgcggatgacattgtgatctgtagtgagagtagggagcaggtggaggaaaacctggagaggtggaggtttgcgctggagagaagaggaatgaaagtcagtcgtagtaagactgagtacatgtgtgtgaatgaaagggagggaagtggaacagtaagattacagggtgaagaggtgaagaaggttcaggagtttaatgcgtgaacgcgtgagagtggggggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200872 True 489 TUCP 0.50 2 21819281 21820059

Neighbor

gene id symbol gene type direction distance location
ap4s1 ap4s1,LOC107590907,LOC107582370,LOC107733114,LOC107694810 coding upstream 220616 21590408 ~ 21598665 (+)
coch coch coding upstream 262850 21550393 ~ 21556431 (+)
scfd1 scfd1,LOC107697716,LOC107719485,LOC107733096 coding upstream 280145 21515071 ~ 21539136 (+)
g2e3 g2e3 coding upstream 309198 21499733 ~ 21510083 (+)
foxg1a foxg1,LOC106611199 coding upstream 498867 21301911 ~ 21320414 (+)
LOC113529717 klhdc1 coding downstream 327067 22147126 ~ 22171181 (+)
klhdc2 klhdc2 coding downstream 363704 22183763 ~ 22198891 (+)
LOC113529714 mok coding downstream 420956 22241015 ~ 22254268 (+)
mpp5a mpp5,LOC108443925,LOC107553288,LOC107657730,LOC107655321,LOC107752770,LOC107707694 coding downstream 1204597 23024656 ~ 23052674 (+)
itsn2b LOC108269989,LOC108441044,LOC107594821,LOC107719497,LOC107590922 coding downstream 1247501 23067560 ~ 23107949 (+)
G169652 NA non-coding upstream 50563 21768164 ~ 21768718 (+)
G169575 NA non-coding upstream 167379 21651641 ~ 21651902 (+)
G169543 NA non-coding upstream 279783 21539250 ~ 21539498 (+)
G169320 NA non-coding upstream 622989 21191166 ~ 21196292 (+)
G169287 ankrd9 non-coding upstream 635503 21181857 ~ 21183778 (+)
LOC117598284 NA non-coding downstream 21557 21841616 ~ 21843598 (+)
G169850 NA non-coding downstream 269415 22089474 ~ 22089698 (+)
G169853 NA non-coding downstream 272927 22092986 ~ 22093240 (+)
G170012 NA non-coding downstream 277311 22097370 ~ 22097571 (+)
LOC117598281 NA non-coding downstream 456053 22276112 ~ 22279828 (+)
im:7136021 LOC108270035 other upstream 52908 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 144820 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 1288059 20521595 ~ 20531222 (+)
fsip1 fsip1 other upstream 1365476 20365174 ~ 20453805 (+)
zbtb42 zbtb42,LOC106610857,LOC106582697 other upstream 1670653 20142714 ~ 20148628 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other downstream 1041748 22861807 ~ 23022395 (+)
kdm1a kdm1a other downstream 2643407 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 3174434 24994493 ~ 25000619 (+)
G171329 NA other downstream 3183924 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 3356315 25176374 ~ 25177897 (+)

Expression


Co-expression Network