Gene
RNA
| Item | Value |
|---|---|
| gene id | G170008 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 22091960 ~ 22092303 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU201196 | True | 344 | lncRNA | 0.42 | 1 | 22091960 | 22092303 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mdga2a | mdga2,mamdc1 | coding | downstream | 3573 | 21781020 ~ 22088387 (-) |
| mis18bp1 | mis18bp1,LOC108261907 | coding | downstream | 331659 | 21742755 ~ 21760301 (-) |
| heatr5a | heatr5a | coding | downstream | 354522 | 21652713 ~ 21737438 (-) |
| hectd1 | hectd1,LOC107582380,LOC107697712,LOC107719534,LOC100380626,LOC102302438 | coding | downstream | 442294 | 21598109 ~ 21649666 (-) |
| strn3 | strn3,LOC107590905,LOC106611207,LOC107694787 | coding | downstream | 500593 | 21557083 ~ 21591367 (-) |
| pole2 | pole2 | coding | upstream | 45391 | 22137694 ~ 22146800 (-) |
| lrr1 | lrr1 | coding | upstream | 80963 | 22173266 ~ 22183862 (-) |
| LOC113529708 | nemf | coding | upstream | 105250 | 22197553 ~ 22241003 (-) |
| wdr20a | wdr20 | coding | upstream | 169245 | 22261548 ~ 22274855 (-) |
| dync1h1 | dync1h1 | coding | upstream | 193545 | 22285848 ~ 22348153 (-) |
| LOC113529722 | NA | non-coding | downstream | 94639 | 21992957 ~ 21997321 (-) |
| LOC117598283 | NA | non-coding | downstream | 99125 | 21991033 ~ 21992835 (-) |
| G169653 | NA | non-coding | downstream | 323218 | 21768369 ~ 21768742 (-) |
| G169651 | NA | non-coding | downstream | 324035 | 21767688 ~ 21767925 (-) |
| G169650 | NA | non-coding | downstream | 324808 | 21766102 ~ 21767152 (-) |
| G170017 | NA | non-coding | upstream | 19276 | 22111579 ~ 22111916 (-) |
| G170020 | NA | non-coding | upstream | 22092 | 22114395 ~ 22114750 (-) |
| G170120 | NA | non-coding | upstream | 163314 | 22255617 ~ 22256725 (-) |
| G170129 | NA | non-coding | upstream | 198178 | 22290481 ~ 22326447 (-) |
| G170428 | NA | non-coding | upstream | 673537 | 22765840 ~ 22767776 (-) |
| bmf1 | bmf | other | downstream | 972335 | 21088303 ~ 21119625 (-) |
| grem1b | LOC108269477 | other | downstream | 1274521 | 20813689 ~ 20817439 (-) |
| G169119 | NA | other | downstream | 1526161 | 20564929 ~ 20565799 (-) |
| gchfr | gchfr,LOC106583112 | other | downstream | 1761214 | 20322764 ~ 20330746 (-) |
| LOC113529462 | LOC108269960 | other | downstream | 1790406 | 20298511 ~ 20301554 (-) |
| G170023 | NA | other | upstream | 23262 | 22115565 ~ 22115876 (-) |
| G170435 | NA | other | upstream | 763191 | 22855494 ~ 22863767 (-) |
| greb1 | greb1 | other | upstream | 1056440 | 23148743 ~ 23179511 (-) |
| luzp1 | luzp1 | other | upstream | 2397935 | 24490238 ~ 24544079 (-) |
| G171256 | NA | other | upstream | 2688979 | 24781282 ~ 24926224 (-) |
