G170083


Basic Information

Item Value
gene id G170083
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22385939 ~ 22386150 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU201277
TGTTGGCCAAGCGCAGGTCTAACACAGAATGGTGGGCTCTAGGCTTGTAGTTGGTGATTGCCTTAAGCCCTTTCCAGACAGAGGCAGAGTCGTTGGCCGAGAGTTGCTGTTCCATTCTCTCACCATGCTCTGATTTAGCTTTTCTCACCTCCTTGCTAAATCTGTACTTGGCCTCTTTGTATTTGTCTTTGTCCCCACTTCTGAATGCAGCC

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0021532 neural tube patterning biological_process
GO:0007498 mesoderm development biological_process
GO:0009888 tissue development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201277 True 212 lncRNA 0.49 1 22385939 22386150

Neighbor

gene id symbol gene type direction distance location
LOC113529714 mok coding upstream 131671 22241015 ~ 22254268 (+)
klhdc2 klhdc2 coding upstream 187048 22183763 ~ 22198891 (+)
LOC113529717 klhdc1 coding upstream 214758 22147126 ~ 22171181 (+)
ap4s1 ap4s1,LOC107590907,LOC107582370,LOC107733114,LOC107694810 coding upstream 787274 21590408 ~ 21598665 (+)
coch coch coding upstream 829508 21550393 ~ 21556431 (+)
mpp5a mpp5,LOC108443925,LOC107553288,LOC107657730,LOC107655321,LOC107752770,LOC107707694 coding downstream 638506 23024656 ~ 23052674 (+)
itsn2b LOC108269989,LOC108441044,LOC107594821,LOC107719497,LOC107590922 coding downstream 681410 23067560 ~ 23107949 (+)
esrrga esrrg,esrrga,LOC107733169,LOC107582200,LOC107590918,LOC107697723 coding downstream 1042150 23428300 ~ 23495384 (+)
ush2a ush2a coding downstream 1124051 23510201 ~ 23719967 (+)
c10h14orf28 c9h14orf28,clg15h14orf28,LOC106581668,LOC106610876 coding downstream 1382842 23768992 ~ 23777316 (+)
LOC117598285 NA non-coding upstream 14739 22349056 ~ 22371200 (+)
G170078 dync1h1,LOC102776894 non-coding upstream 37779 22314691 ~ 22348160 (+)
G170075 dync1h1,LOC107694517,LOC107732031,LOC107660570,LOC107748244 non-coding upstream 72574 22309505 ~ 22313365 (+)
G170076 NA non-coding upstream 89885 22286857 ~ 22296054 (+)
LOC117598281 NA non-coding upstream 106111 22276112 ~ 22279828 (+)
LOC113530233 NA non-coding downstream 25012 22411162 ~ 22411362 (+)
LOC117598286 NA non-coding downstream 30026 22416176 ~ 22416851 (+)
G170260 NA non-coding downstream 371090 22757240 ~ 22757444 (+)
G170261 NA non-coding downstream 373091 22759241 ~ 22759476 (+)
G170266 NA non-coding downstream 379573 22765723 ~ 22767755 (+)
G169692 LOC107990201 other upstream 565880 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 619566 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 711478 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 1854717 20521595 ~ 20531222 (+)
fsip1 fsip1 other upstream 1932134 20365174 ~ 20453805 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other downstream 475657 22861807 ~ 23022395 (+)
kdm1a kdm1a other downstream 2077316 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 2608343 24994493 ~ 25000619 (+)
G171329 NA other downstream 2617833 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 2790224 25176374 ~ 25177897 (+)

Expression


Co-expression Network